==1819064== Memcheck, a memory error detector ==1819064== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1819064== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1819064== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==1819064== Parent PID: 1816752 ==1819064== ==1819064== ==1819064== FILE DESCRIPTORS: 10 open (3 std) at exit. ==1819064== Open file descriptor 12: ==1819064== at 0xF11907D: pipe (pipe.c:29) ==1819064== by 0x18A1B07D: ??? ==1819064== by 0x141504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1819064== by 0x10D76418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1819064== by 0x10D0FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1819064== by 0xFA06D38: PetscInitialize (pinit.c:924) ==1819064== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1819064== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1819064== by 0x1D3486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1819064== by 0x1CCDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1819064== by 0x1D0554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1819064== by 0x1D03F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1819064== by 0x1D0A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1819064== by 0x1CB1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==1819064== ==1819064== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1819064== at 0xF11DA1C: __open_nocancel (open64_nocancel.c:39) ==1819064== by 0xF0A1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1819064== by 0xE4A5822: ??? ==1819064== by 0xE4A596F: ??? ==1819064== by 0x141F56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1819064== by 0x141F5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1819064== by 0x141AB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1819064== by 0x141502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1819064== by 0x10D76418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1819064== by 0x10D0FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1819064== by 0xFA06D38: PetscInitialize (pinit.c:924) ==1819064== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1819064== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1819064== by 0x1D3486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1819064== by 0x1CCDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1819064== by 0x1D0554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1819064== by 0x1D03F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1819064== by 0x1D0A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1819064== by 0x1CB1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==1819064== ==1819064== Open file descriptor 118: ==1819064== ==1819064== ==1819064== Open file descriptor 115: ==1819064== ==1819064== ==1819064== Open file descriptor 113: /usr/share/ca-certificates/mozilla/D-TRUST_Root_Class_3_CA_2_2009.crt ==1819064== ==1819064== ==1819064== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==1819064== ==1819064== ==1819064== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1819064== ==1819064== ==1819064== ==1819064== HEAP SUMMARY: ==1819064== in use at exit: 835,564 bytes in 11,673 blocks ==1819064== total heap usage: 7,400,488 allocs, 7,388,815 frees, 8,325,609,016 bytes allocated ==1819064== ==1819064== LEAK SUMMARY: ==1819064== definitely lost: 0 bytes in 0 blocks ==1819064== indirectly lost: 0 bytes in 0 blocks ==1819064== possibly lost: 0 bytes in 0 blocks ==1819064== still reachable: 56 bytes in 3 blocks ==1819064== suppressed: 835,508 bytes in 11,670 blocks ==1819064== Reachable blocks (those to which a pointer was found) are not shown. ==1819064== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1819064== ==1819064== For lists of detected and suppressed errors, rerun with: -s ==1819064== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)