==978840== Memcheck, a memory error detector ==978840== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==978840== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==978840== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==978840== Parent PID: 977326 ==978840== ==978840== ==978840== FILE DESCRIPTORS: 9 open (3 std) at exit. ==978840== Open file descriptor 12: ==978840== at 0xE69807D: pipe (pipe.c:29) ==978840== by 0x18A1D07D: ??? ==978840== by 0x12FC34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==978840== by 0xE2E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==978840== by 0xE27ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==978840== by 0xCF75D38: PetscInitialize (pinit.c:924) ==978840== by 0xCDE5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==978840== by 0xCDE51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==978840== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==978840== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==978840== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==978840== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==978840== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==978840== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==978840== ==978840== Open file descriptor 8: /dev/shm/open_mpi.0000 ==978840== at 0xE69CA1C: __open_nocancel (open64_nocancel.c:39) ==978840== by 0xE620BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==978840== by 0xCE19822: ??? ==978840== by 0xCE1996F: ??? ==978840== by 0x130686DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==978840== by 0x13068938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==978840== by 0x1301E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==978840== by 0x12FC32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==978840== by 0xE2E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==978840== by 0xE27ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==978840== by 0xCF75D38: PetscInitialize (pinit.c:924) ==978840== by 0xCDE5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==978840== by 0xCDE51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==978840== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==978840== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==978840== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==978840== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==978840== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==978840== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==978840== ==978840== Open file descriptor 115: ==978840== ==978840== ==978840== Open file descriptor 110: ==978840== ==978840== ==978840== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==978840== ==978840== ==978840== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==978840== ==978840== ==978840== ==978840== HEAP SUMMARY: ==978840== in use at exit: 995,548 bytes in 13,913 blocks ==978840== total heap usage: 178,236 allocs, 164,323 frees, 1,582,670,839 bytes allocated ==978840== ==978840== LEAK SUMMARY: ==978840== definitely lost: 0 bytes in 0 blocks ==978840== indirectly lost: 0 bytes in 0 blocks ==978840== possibly lost: 0 bytes in 0 blocks ==978840== still reachable: 24 bytes in 2 blocks ==978840== suppressed: 995,524 bytes in 13,911 blocks ==978840== Reachable blocks (those to which a pointer was found) are not shown. ==978840== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==978840== ==978840== For lists of detected and suppressed errors, rerun with: -s ==978840== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)