==979713== Memcheck, a memory error detector ==979713== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==979713== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==979713== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithBuskeUpdate -malloc_debug -malloc_dump -memory_info ==979713== Parent PID: 977326 ==979713== ==979713== ==979713== FILE DESCRIPTORS: 9 open (3 std) at exit. ==979713== Open file descriptor 12: ==979713== at 0xEBAC07D: pipe (pipe.c:29) ==979713== by 0x18A1D07D: ??? ==979713== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==979713== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==979713== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==979713== by 0xF499D38: PetscInitialize (pinit.c:924) ==979713== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==979713== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==979713== by 0x2CC5B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==979713== by 0x2C3A9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==979713== by 0x2C7EB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==979713== by 0x2C7DB3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==979713== by 0x2C83C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==979713== by 0x2C2295: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) ==979713== ==979713== Open file descriptor 8: /dev/shm/open_mpi.0000 ==979713== at 0xEBB0A1C: __open_nocancel (open64_nocancel.c:39) ==979713== by 0xEB34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==979713== by 0xE49F822: ??? ==979713== by 0xE49F96F: ??? ==979713== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==979713== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==979713== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==979713== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==979713== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==979713== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==979713== by 0xF499D38: PetscInitialize (pinit.c:924) ==979713== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==979713== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==979713== by 0x2CC5B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==979713== by 0x2C3A9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==979713== by 0x2C7EB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==979713== by 0x2C7DB3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==979713== by 0x2C83C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==979713== by 0x2C2295: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) ==979713== ==979713== Open file descriptor 115: ==979713== ==979713== ==979713== Open file descriptor 110: ==979713== ==979713== ==979713== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt ==979713== ==979713== ==979713== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==979713== ==979713== ==979713== ==979713== HEAP SUMMARY: ==979713== in use at exit: 995,580 bytes in 13,914 blocks ==979713== total heap usage: 69,105 allocs, 55,191 frees, 1,573,232,375 bytes allocated ==979713== ==979713== LEAK SUMMARY: ==979713== definitely lost: 0 bytes in 0 blocks ==979713== indirectly lost: 0 bytes in 0 blocks ==979713== possibly lost: 0 bytes in 0 blocks ==979713== still reachable: 56 bytes in 3 blocks ==979713== of which reachable via heuristic: ==979713== newarray : 136 bytes in 1 blocks ==979713== suppressed: 995,524 bytes in 13,911 blocks ==979713== Reachable blocks (those to which a pointer was found) are not shown. ==979713== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==979713== ==979713== For lists of detected and suppressed errors, rerun with: -s ==979713== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)