==979991== Memcheck, a memory error detector ==979991== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==979991== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==979991== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==979991== Parent PID: 977326 ==979991== ==979991== ==979991== FILE DESCRIPTORS: 9 open (3 std) at exit. ==979991== Open file descriptor 12: ==979991== at 0xEC5107D: pipe (pipe.c:29) ==979991== by 0x18A1D07D: ??? ==979991== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==979991== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==979991== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==979991== by 0xF582D38: PetscInitialize (pinit.c:924) ==979991== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==979991== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==979991== by 0x13285A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==979991== by 0x12D813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==979991== by 0x12FFCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==979991== by 0x12FEC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==979991== by 0x1304DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==979991== by 0x12C015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==979991== ==979991== Open file descriptor 8: /dev/shm/open_mpi.0000 ==979991== at 0xEC55A1C: __open_nocancel (open64_nocancel.c:39) ==979991== by 0xEBD9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==979991== by 0xE49F822: ??? ==979991== by 0xE49F96F: ??? ==979991== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==979991== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==979991== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==979991== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==979991== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==979991== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==979991== by 0xF582D38: PetscInitialize (pinit.c:924) ==979991== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==979991== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==979991== by 0x13285A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==979991== by 0x12D813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==979991== by 0x12FFCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==979991== by 0x12FEC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==979991== by 0x1304DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==979991== by 0x12C015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==979991== ==979991== Open file descriptor 115: ==979991== ==979991== ==979991== Open file descriptor 110: ==979991== ==979991== ==979991== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==979991== ==979991== ==979991== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==979991== ==979991== ==979991== ==979991== HEAP SUMMARY: ==979991== in use at exit: 995,524 bytes in 13,910 blocks ==979991== total heap usage: 6,686,555 allocs, 6,672,645 frees, 9,228,715,942 bytes allocated ==979991== ==979991== LEAK SUMMARY: ==979991== definitely lost: 0 bytes in 0 blocks ==979991== indirectly lost: 0 bytes in 0 blocks ==979991== possibly lost: 0 bytes in 0 blocks ==979991== still reachable: 56 bytes in 3 blocks ==979991== suppressed: 995,468 bytes in 13,907 blocks ==979991== Reachable blocks (those to which a pointer was found) are not shown. ==979991== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==979991== ==979991== For lists of detected and suppressed errors, rerun with: -s ==979991== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)