==993541== Memcheck, a memory error detector ==993541== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==993541== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==993541== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==993541== Parent PID: 977326 ==993541== ==993541== ==993541== FILE DESCRIPTORS: 9 open (3 std) at exit. ==993541== Open file descriptor 12: ==993541== at 0x1010807D: pipe (pipe.c:29) ==993541== by 0x18A1D07D: ??? ==993541== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==993541== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==993541== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==993541== by 0xE593D38: PetscInitialize (pinit.c:924) ==993541== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==993541== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==993541== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==993541== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==993541== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==993541== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==993541== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==993541== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==993541== ==993541== Open file descriptor 8: /dev/shm/open_mpi.0000 ==993541== at 0x1010CA1C: __open_nocancel (open64_nocancel.c:39) ==993541== by 0x10090BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==993541== by 0xF81D822: ??? ==993541== by 0xF81D96F: ??? ==993541== by 0x140296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==993541== by 0x14029938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==993541== by 0x13FDF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==993541== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==993541== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==993541== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==993541== by 0xE593D38: PetscInitialize (pinit.c:924) ==993541== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==993541== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==993541== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==993541== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==993541== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==993541== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==993541== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==993541== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==993541== ==993541== Open file descriptor 115: ==993541== ==993541== ==993541== Open file descriptor 110: ==993541== ==993541== ==993541== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==993541== ==993541== ==993541== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==993541== ==993541== ==993541== ==993541== HEAP SUMMARY: ==993541== in use at exit: 995,524 bytes in 13,910 blocks ==993541== total heap usage: 1,411,491 allocs, 1,397,581 frees, 1,631,571,688 bytes allocated ==993541== ==993541== LEAK SUMMARY: ==993541== definitely lost: 0 bytes in 0 blocks ==993541== indirectly lost: 0 bytes in 0 blocks ==993541== possibly lost: 0 bytes in 0 blocks ==993541== still reachable: 56 bytes in 3 blocks ==993541== suppressed: 995,468 bytes in 13,907 blocks ==993541== Reachable blocks (those to which a pointer was found) are not shown. ==993541== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==993541== ==993541== For lists of detected and suppressed errors, rerun with: -s ==993541== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)