==1640422== Memcheck, a memory error detector ==1640422== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1640422== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1640422== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1640422== Parent PID: 1631695 ==1640422== ==1640422== ==1640422== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1640422== Open file descriptor 12: ==1640422== at 0xCF5526D: pipe (pipe.c:29) ==1640422== by 0x18AE007D: ??? ==1640422== by 0x1407D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1640422== by 0x104BB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1640422== by 0x10454D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1640422== by 0xF14BD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1640422== by 0xCB9C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1640422== by 0xCB9C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1640422== by 0x124670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1640422== by 0x11FBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1640422== by 0x1221AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1640422== by 0x12204A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1640422== by 0x1226E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1640422== by 0x11E015: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==1640422== ==1640422== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1640422== at 0xCF59C0C: __open_nocancel (open64_nocancel.c:39) ==1640422== by 0xCEDDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1640422== by 0xCBD0822: ??? ==1640422== by 0xCBD096F: ??? ==1640422== by 0x141226DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1640422== by 0x14122938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1640422== by 0x140D8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1640422== by 0x1407D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1640422== by 0x104BB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1640422== by 0x10454D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1640422== by 0xF14BD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1640422== by 0xCB9C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1640422== by 0xCB9C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1640422== by 0x124670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1640422== by 0x11FBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1640422== by 0x1221AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1640422== by 0x12204A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1640422== by 0x1226E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1640422== by 0x11E015: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==1640422== ==1640422== Open file descriptor 117: ==1640422== ==1640422== ==1640422== Open file descriptor 113: ==1640422== ==1640422== ==1640422== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt ==1640422== ==1640422== ==1640422== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1640422== ==1640422== ==1640422== ==1640422== HEAP SUMMARY: ==1640422== in use at exit: 857,961 bytes in 12,109 blocks ==1640422== total heap usage: 37,226,987 allocs, 37,214,878 frees, 3,889,651,370 bytes allocated ==1640422== ==1640422== LEAK SUMMARY: ==1640422== definitely lost: 0 bytes in 0 blocks ==1640422== indirectly lost: 0 bytes in 0 blocks ==1640422== possibly lost: 0 bytes in 0 blocks ==1640422== still reachable: 56 bytes in 3 blocks ==1640422== suppressed: 857,905 bytes in 12,106 blocks ==1640422== Reachable blocks (those to which a pointer was found) are not shown. ==1640422== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1640422== ==1640422== For lists of detected and suppressed errors, rerun with: -s ==1640422== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)