==1664921== Memcheck, a memory error detector ==1664921== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1664921== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1664921== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation -malloc_debug -malloc_dump -memory_info ==1664921== Parent PID: 1663143 ==1664921== ==1664921== ==1664921== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1664921== Open file descriptor 12: ==1664921== at 0xE94726D: pipe (pipe.c:29) ==1664921== by 0x18ADF07D: ??? ==1664921== by 0x1407C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1664921== by 0x105A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1664921== by 0x1053DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1664921== by 0xF232D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1664921== by 0xE467153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1664921== by 0xE4671A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1664921== by 0x31148E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1664921== by 0x307A99: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1664921== by 0x30BE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1664921== by 0x30BCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1664921== by 0x30C373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1664921== by 0x305EB5: main (TestOffLatticeSimulation.cpp:19) ==1664921== ==1664921== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1664921== at 0xE94BC0C: __open_nocancel (open64_nocancel.c:39) ==1664921== by 0xE8CFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1664921== by 0xE49B822: ??? ==1664921== by 0xE49B96F: ??? ==1664921== by 0x141216DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1664921== by 0x14121938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1664921== by 0x140D7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1664921== by 0x1407C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1664921== by 0x105A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1664921== by 0x1053DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1664921== by 0xF232D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1664921== by 0xE467153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1664921== by 0xE4671A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1664921== by 0x31148E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1664921== by 0x307A99: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1664921== by 0x30BE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1664921== by 0x30BCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1664921== by 0x30C373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1664921== by 0x305EB5: main (TestOffLatticeSimulation.cpp:19) ==1664921== ==1664921== Open file descriptor 117: ==1664921== ==1664921== ==1664921== Open file descriptor 113: ==1664921== ==1664921== ==1664921== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation_valgrind.txt ==1664921== ==1664921== ==1664921== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1664921== ==1664921== ==1664921== ==1664921== HEAP SUMMARY: ==1664921== in use at exit: 857,961 bytes in 12,109 blocks ==1664921== total heap usage: 12,173,469 allocs, 12,161,360 frees, 4,034,146,254 bytes allocated ==1664921== ==1664921== LEAK SUMMARY: ==1664921== definitely lost: 0 bytes in 0 blocks ==1664921== indirectly lost: 0 bytes in 0 blocks ==1664921== possibly lost: 0 bytes in 0 blocks ==1664921== still reachable: 56 bytes in 3 blocks ==1664921== suppressed: 857,905 bytes in 12,106 blocks ==1664921== Reachable blocks (those to which a pointer was found) are not shown. ==1664921== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1664921== ==1664921== For lists of detected and suppressed errors, rerun with: -s ==1664921== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)