==2016001== Memcheck, a memory error detector ==2016001== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2016001== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2016001== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestExtrinsicPullModifier -malloc_debug -malloc_dump -memory_info ==2016001== Parent PID: 2014159 ==2016001== ==2016001== ==2016001== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2016001== Open file descriptor 12: ==2016001== at 0xEBB407D: pipe (pipe.c:29) ==2016001== by 0x18A1C07D: ??? ==2016001== by 0x1402D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2016001== by 0x10813418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2016001== by 0x107ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2016001== by 0xF4A1D38: PetscInitialize (pinit.c:924) ==2016001== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2016001== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2016001== by 0x1FC280: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2016001== by 0x1F453F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2016001== by 0x1F7DA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2016001== by 0x1F7CA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2016001== by 0x1F82B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2016001== by 0x1F2D35: main (TestExtrinsicPullModifier.cpp:18) ==2016001== ==2016001== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2016001== at 0xEBB8A1C: __open_nocancel (open64_nocancel.c:39) ==2016001== by 0xEB3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2016001== by 0xE4A5822: ??? ==2016001== by 0xE4A596F: ??? ==2016001== by 0x140D26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2016001== by 0x140D2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2016001== by 0x14088922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2016001== by 0x1402D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2016001== by 0x10813418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2016001== by 0x107ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2016001== by 0xF4A1D38: PetscInitialize (pinit.c:924) ==2016001== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2016001== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2016001== by 0x1FC280: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2016001== by 0x1F453F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2016001== by 0x1F7DA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2016001== by 0x1F7CA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2016001== by 0x1F82B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2016001== by 0x1F2D35: main (TestExtrinsicPullModifier.cpp:18) ==2016001== ==2016001== Open file descriptor 115: ==2016001== ==2016001== ==2016001== Open file descriptor 112: ==2016001== ==2016001== ==2016001== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtrinsicPullModifier_valgrind.txt ==2016001== ==2016001== ==2016001== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2016001== ==2016001== ==2016001== ==2016001== HEAP SUMMARY: ==2016001== in use at exit: 835,633 bytes in 11,677 blocks ==2016001== total heap usage: 232,965 allocs, 221,288 frees, 1,567,879,772 bytes allocated ==2016001== ==2016001== LEAK SUMMARY: ==2016001== definitely lost: 0 bytes in 0 blocks ==2016001== indirectly lost: 0 bytes in 0 blocks ==2016001== possibly lost: 0 bytes in 0 blocks ==2016001== still reachable: 56 bytes in 3 blocks ==2016001== suppressed: 835,577 bytes in 11,674 blocks ==2016001== Reachable blocks (those to which a pointer was found) are not shown. ==2016001== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2016001== ==2016001== For lists of detected and suppressed errors, rerun with: -s ==2016001== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)