==1102624== Memcheck, a memory error detector ==1102624== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1102624== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1102624== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==1102624== Parent PID: 1087048 ==1102624== ==1102624== ==1102624== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1102624== Open file descriptor 12: ==1102624== at 0x1029D07D: pipe (pipe.c:29) ==1102624== by 0x1A6E107D: ??? ==1102624== by 0x148854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1102624== by 0xFBA5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1102624== by 0xFB3ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1102624== by 0xE835D38: PetscInitialize (pinit.c:924) ==1102624== by 0xE6A5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1102624== by 0xE6A51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1102624== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1102624== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1102624== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1102624== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1102624== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1102624== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==1102624== ==1102624== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1102624== at 0x102A1A1C: __open_nocancel (open64_nocancel.c:39) ==1102624== by 0x10225BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1102624== by 0xE6D9822: ??? ==1102624== by 0xE6D996F: ??? ==1102624== by 0x1492A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1102624== by 0x1492A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1102624== by 0x148E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1102624== by 0x148852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1102624== by 0xFBA5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1102624== by 0xFB3ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1102624== by 0xE835D38: PetscInitialize (pinit.c:924) ==1102624== by 0xE6A5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1102624== by 0xE6A51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1102624== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1102624== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1102624== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1102624== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1102624== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1102624== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==1102624== ==1102624== Open file descriptor 115: ==1102624== ==1102624== ==1102624== Open file descriptor 112: ==1102624== ==1102624== ==1102624== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt ==1102624== ==1102624== ==1102624== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1102624== ==1102624== ==1102624== ==1102624== HEAP SUMMARY: ==1102624== in use at exit: 995,665 bytes in 13,915 blocks ==1102624== total heap usage: 874,137 allocs, 860,222 frees, 1,693,943,854 bytes allocated ==1102624== ==1102624== LEAK SUMMARY: ==1102624== definitely lost: 0 bytes in 0 blocks ==1102624== indirectly lost: 0 bytes in 0 blocks ==1102624== possibly lost: 0 bytes in 0 blocks ==1102624== still reachable: 120 bytes in 4 blocks ==1102624== suppressed: 995,545 bytes in 13,911 blocks ==1102624== Reachable blocks (those to which a pointer was found) are not shown. ==1102624== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1102624== ==1102624== For lists of detected and suppressed errors, rerun with: -s ==1102624== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)