==1088275== Memcheck, a memory error detector ==1088275== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1088275== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1088275== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeBasedCellCycleModels -malloc_debug -malloc_dump -memory_info ==1088275== Parent PID: 1087048 ==1088275== ==1088275== ==1088275== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1088275== Open file descriptor 12: ==1088275== at 0xE69807D: pipe (pipe.c:29) ==1088275== by 0x18A1D07D: ??? ==1088275== by 0x12FC34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1088275== by 0xE2E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1088275== by 0xE27ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1088275== by 0xCF75D38: PetscInitialize (pinit.c:924) ==1088275== by 0xCDE5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1088275== by 0xCDE51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1088275== by 0x1361D7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1088275== by 0x12EF6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1088275== by 0x131C2A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1088275== by 0x131ACA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1088275== by 0x132161: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1088275== by 0x12B8A5: main (TestOdeBasedCellCycleModels.cpp:19) ==1088275== ==1088275== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1088275== at 0xE69CA1C: __open_nocancel (open64_nocancel.c:39) ==1088275== by 0xE620BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1088275== by 0xCE19822: ??? ==1088275== by 0xCE1996F: ??? ==1088275== by 0x130686DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1088275== by 0x13068938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1088275== by 0x1301E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1088275== by 0x12FC32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1088275== by 0xE2E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1088275== by 0xE27ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1088275== by 0xCF75D38: PetscInitialize (pinit.c:924) ==1088275== by 0xCDE5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1088275== by 0xCDE51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1088275== by 0x1361D7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1088275== by 0x12EF6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1088275== by 0x131C2A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1088275== by 0x131ACA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1088275== by 0x132161: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1088275== by 0x12B8A5: main (TestOdeBasedCellCycleModels.cpp:19) ==1088275== ==1088275== Open file descriptor 115: ==1088275== ==1088275== ==1088275== Open file descriptor 112: ==1088275== ==1088275== ==1088275== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModels_valgrind.txt ==1088275== ==1088275== ==1088275== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1088275== ==1088275== ==1088275== ==1088275== HEAP SUMMARY: ==1088275== in use at exit: 995,542 bytes in 13,911 blocks ==1088275== total heap usage: 4,191,426 allocs, 4,177,515 frees, 2,003,107,241 bytes allocated ==1088275== ==1088275== LEAK SUMMARY: ==1088275== definitely lost: 0 bytes in 0 blocks ==1088275== indirectly lost: 0 bytes in 0 blocks ==1088275== possibly lost: 0 bytes in 0 blocks ==1088275== still reachable: 72 bytes in 4 blocks ==1088275== suppressed: 995,470 bytes in 13,907 blocks ==1088275== Reachable blocks (those to which a pointer was found) are not shown. ==1088275== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1088275== ==1088275== For lists of detected and suppressed errors, rerun with: -s ==1088275== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 39)