==1088935== Memcheck, a memory error detector ==1088935== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1088935== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1088935== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation -malloc_debug -malloc_dump -memory_info ==1088935== Parent PID: 1087048 ==1088935== ==1088935== ==1088935== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1088935== Open file descriptor 12: ==1088935== at 0xEC9507D: pipe (pipe.c:29) ==1088935== by 0x18A1D07D: ??? ==1088935== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1088935== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1088935== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1088935== by 0xF582D38: PetscInitialize (pinit.c:924) ==1088935== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1088935== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1088935== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1088935== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1088935== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1088935== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1088935== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1088935== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) ==1088935== ==1088935== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1088935== at 0xEC99A1C: __open_nocancel (open64_nocancel.c:39) ==1088935== by 0xEC1DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1088935== by 0xE49F822: ??? ==1088935== by 0xE49F96F: ??? ==1088935== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1088935== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1088935== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1088935== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1088935== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1088935== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1088935== by 0xF582D38: PetscInitialize (pinit.c:924) ==1088935== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1088935== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1088935== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1088935== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1088935== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1088935== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1088935== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1088935== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) ==1088935== ==1088935== Open file descriptor 115: ==1088935== ==1088935== ==1088935== Open file descriptor 112: ==1088935== ==1088935== ==1088935== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation_valgrind.txt ==1088935== ==1088935== ==1088935== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1088935== ==1088935== ==1088935== ==1088935== HEAP SUMMARY: ==1088935== in use at exit: 995,526 bytes in 13,910 blocks ==1088935== total heap usage: 12,862,018 allocs, 12,848,108 frees, 4,094,367,415 bytes allocated ==1088935== ==1088935== LEAK SUMMARY: ==1088935== definitely lost: 0 bytes in 0 blocks ==1088935== indirectly lost: 0 bytes in 0 blocks ==1088935== possibly lost: 0 bytes in 0 blocks ==1088935== still reachable: 56 bytes in 3 blocks ==1088935== suppressed: 995,470 bytes in 13,907 blocks ==1088935== Reachable blocks (those to which a pointer was found) are not shown. ==1088935== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1088935== ==1088935== For lists of detected and suppressed errors, rerun with: -s ==1088935== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)