==2172378== Memcheck, a memory error detector ==2172378== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2172378== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2172378== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==2172378== Parent PID: 2165091 ==2172378== ==2172378== ==2172378== FILE DESCRIPTORS: 10 open (3 std) at exit. ==2172378== Open file descriptor 12: ==2172378== at 0xEC9D07D: pipe (pipe.c:29) ==2172378== by 0x18A1C07D: ??? ==2172378== by 0x1402D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2172378== by 0x108FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2172378== by 0x10893D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2172378== by 0xF58AD38: PetscInitialize (pinit.c:924) ==2172378== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2172378== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2172378== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2172378== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2172378== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2172378== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2172378== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2172378== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==2172378== ==2172378== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2172378== at 0xECA1A1C: __open_nocancel (open64_nocancel.c:39) ==2172378== by 0xEC25BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2172378== by 0xE4A5822: ??? ==2172378== by 0xE4A596F: ??? ==2172378== by 0x140D26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2172378== by 0x140D2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2172378== by 0x14088922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2172378== by 0x1402D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2172378== by 0x108FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2172378== by 0x10893D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2172378== by 0xF58AD38: PetscInitialize (pinit.c:924) ==2172378== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2172378== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2172378== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2172378== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2172378== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2172378== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2172378== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2172378== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==2172378== ==2172378== Open file descriptor 118: ==2172378== ==2172378== ==2172378== Open file descriptor 114: ==2172378== ==2172378== ==2172378== Open file descriptor 113: /usr/share/ca-certificates/mozilla/QuoVadis_Root_CA_2_G3.crt ==2172378== ==2172378== ==2172378== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt ==2172378== ==2172378== ==2172378== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2172378== ==2172378== ==2172378== ==2172378== HEAP SUMMARY: ==2172378== in use at exit: 835,580 bytes in 11,674 blocks ==2172378== total heap usage: 11,694,681 allocs, 11,683,007 frees, 2,411,063,901 bytes allocated ==2172378== ==2172378== LEAK SUMMARY: ==2172378== definitely lost: 0 bytes in 0 blocks ==2172378== indirectly lost: 0 bytes in 0 blocks ==2172378== possibly lost: 0 bytes in 0 blocks ==2172378== still reachable: 72 bytes in 4 blocks ==2172378== suppressed: 835,508 bytes in 11,670 blocks ==2172378== Reachable blocks (those to which a pointer was found) are not shown. ==2172378== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2172378== ==2172378== For lists of detected and suppressed errors, rerun with: -s ==2172378== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)