==2313169== Memcheck, a memory error detector ==2313169== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2313169== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2313169== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==2313169== Parent PID: 2310862 ==2313169== ==2313169== ==2313169== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2313169== Open file descriptor 12: ==2313169== at 0xF8E907D: pipe (pipe.c:29) ==2313169== by 0x196AB07D: ??? ==2313169== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2313169== by 0x1158A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2313169== by 0x11523D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2313169== by 0x1021AD38: PetscInitialize (pinit.c:924) ==2313169== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2313169== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2313169== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2313169== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2313169== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2313169== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2313169== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2313169== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==2313169== ==2313169== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2313169== at 0xF8EDA1C: __open_nocancel (open64_nocancel.c:39) ==2313169== by 0xF871BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2313169== by 0xF135822: ??? ==2313169== by 0xF13596F: ??? ==2313169== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2313169== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2313169== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2313169== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2313169== by 0x1158A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2313169== by 0x11523D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2313169== by 0x1021AD38: PetscInitialize (pinit.c:924) ==2313169== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2313169== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2313169== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2313169== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2313169== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2313169== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2313169== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2313169== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==2313169== ==2313169== Open file descriptor 115: ==2313169== ==2313169== ==2313169== Open file descriptor 112: ==2313169== ==2313169== ==2313169== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==2313169== ==2313169== ==2313169== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2313169== ==2313169== ==2313169== ==2313169== HEAP SUMMARY: ==2313169== in use at exit: 835,564 bytes in 11,673 blocks ==2313169== total heap usage: 6,682,826 allocs, 6,671,153 frees, 9,197,429,614 bytes allocated ==2313169== ==2313169== LEAK SUMMARY: ==2313169== definitely lost: 0 bytes in 0 blocks ==2313169== indirectly lost: 0 bytes in 0 blocks ==2313169== possibly lost: 0 bytes in 0 blocks ==2313169== still reachable: 56 bytes in 3 blocks ==2313169== suppressed: 835,508 bytes in 11,670 blocks ==2313169== Reachable blocks (those to which a pointer was found) are not shown. ==2313169== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2313169== ==2313169== For lists of detected and suppressed errors, rerun with: -s ==2313169== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)