==1902779== Memcheck, a memory error detector ==1902779== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1902779== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1902779== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==1902779== Parent PID: 1901347 ==1902779== ==1902779== ==1902779== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1902779== Open file descriptor 12: ==1902779== at 0xE69126D: pipe (pipe.c:29) ==1902779== by 0x18ADF07D: ??? ==1902779== by 0x12C754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1902779== by 0xE2DE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1902779== by 0xE277D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1902779== by 0xCF6ED38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1902779== by 0xCDE1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1902779== by 0xCDE11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1902779== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1902779== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1902779== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1902779== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1902779== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1902779== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==1902779== ==1902779== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1902779== at 0xE695C0C: __open_nocancel (open64_nocancel.c:39) ==1902779== by 0xE619BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1902779== by 0xCE15822: ??? ==1902779== by 0xCE1596F: ??? ==1902779== by 0x12D1A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1902779== by 0x12D1A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1902779== by 0x12CD0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1902779== by 0x12C752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1902779== by 0xE2DE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1902779== by 0xE277D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1902779== by 0xCF6ED38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1902779== by 0xCDE1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1902779== by 0xCDE11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1902779== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1902779== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1902779== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1902779== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1902779== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1902779== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==1902779== ==1902779== Open file descriptor 115: ==1902779== ==1902779== ==1902779== Open file descriptor 112: ==1902779== ==1902779== ==1902779== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==1902779== ==1902779== ==1902779== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1902779== ==1902779== ==1902779== ==1902779== HEAP SUMMARY: ==1902779== in use at exit: 857,992 bytes in 12,112 blocks ==1902779== total heap usage: 174,218 allocs, 162,106 frees, 1,554,061,527 bytes allocated ==1902779== ==1902779== LEAK SUMMARY: ==1902779== definitely lost: 0 bytes in 0 blocks ==1902779== indirectly lost: 0 bytes in 0 blocks ==1902779== possibly lost: 0 bytes in 0 blocks ==1902779== still reachable: 24 bytes in 2 blocks ==1902779== suppressed: 857,968 bytes in 12,110 blocks ==1902779== Reachable blocks (those to which a pointer was found) are not shown. ==1902779== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1902779== ==1902779== For lists of detected and suppressed errors, rerun with: -s ==1902779== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)