==2349659== Memcheck, a memory error detector ==2349659== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2349659== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2349659== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==2349659== Parent PID: 2348067 ==2349659== ==2349659== ==2349659== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2349659== Open file descriptor 12: ==2349659== at 0xDB5A07D: pipe (pipe.c:29) ==2349659== by 0x196AC07D: ??? ==2349659== by 0x14C774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2349659== by 0x1115C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2349659== by 0x110F5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2349659== by 0xFDECD38: PetscInitialize (pinit.c:924) ==2349659== by 0xD7552DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2349659== by 0xD75532D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2349659== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2349659== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2349659== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2349659== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2349659== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2349659== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==2349659== ==2349659== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2349659== at 0xDB5EA1C: __open_nocancel (open64_nocancel.c:39) ==2349659== by 0xDAE2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2349659== by 0xD790822: ??? ==2349659== by 0xD79096F: ??? ==2349659== by 0x14D1C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2349659== by 0x14D1C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2349659== by 0x14CD2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2349659== by 0x14C772DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2349659== by 0x1115C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2349659== by 0x110F5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2349659== by 0xFDECD38: PetscInitialize (pinit.c:924) ==2349659== by 0xD7552DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2349659== by 0xD75532D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2349659== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2349659== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2349659== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2349659== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2349659== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2349659== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==2349659== ==2349659== Open file descriptor 115: ==2349659== ==2349659== ==2349659== Open file descriptor 112: ==2349659== ==2349659== ==2349659== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==2349659== ==2349659== ==2349659== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2349659== ==2349659== ==2349659== ==2349659== HEAP SUMMARY: ==2349659== in use at exit: 835,601 bytes in 11,676 blocks ==2349659== total heap usage: 66,814 allocs, 55,138 frees, 1,541,056,269 bytes allocated ==2349659== ==2349659== LEAK SUMMARY: ==2349659== definitely lost: 0 bytes in 0 blocks ==2349659== indirectly lost: 0 bytes in 0 blocks ==2349659== possibly lost: 0 bytes in 0 blocks ==2349659== still reachable: 24 bytes in 2 blocks ==2349659== suppressed: 835,577 bytes in 11,674 blocks ==2349659== Reachable blocks (those to which a pointer was found) are not shown. ==2349659== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2349659== ==2349659== For lists of detected and suppressed errors, rerun with: -s ==2349659== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)