==2444971== Memcheck, a memory error detector ==2444971== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2444971== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2444971== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==2444971== Parent PID: 2429088 ==2444971== ==2444971== ==2444971== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2444971== Open file descriptor 12: ==2444971== at 0x118E907D: pipe (pipe.c:29) ==2444971== by 0x1A6DC07D: ??? ==2444971== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2444971== by 0x111F1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2444971== by 0x1118AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2444971== by 0xFE53D38: PetscInitialize (pinit.c:924) ==2444971== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2444971== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2444971== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2444971== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2444971== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2444971== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2444971== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2444971== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==2444971== ==2444971== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2444971== at 0x118EDA1C: __open_nocancel (open64_nocancel.c:39) ==2444971== by 0x11871BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2444971== by 0x110E3822: ??? ==2444971== by 0x110E396F: ??? ==2444971== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2444971== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2444971== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2444971== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2444971== by 0x111F1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2444971== by 0x1118AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2444971== by 0xFE53D38: PetscInitialize (pinit.c:924) ==2444971== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2444971== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2444971== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2444971== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2444971== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2444971== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2444971== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2444971== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==2444971== ==2444971== Open file descriptor 115: ==2444971== ==2444971== ==2444971== Open file descriptor 112: ==2444971== ==2444971== ==2444971== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==2444971== ==2444971== ==2444971== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2444971== ==2444971== ==2444971== ==2444971== HEAP SUMMARY: ==2444971== in use at exit: 835,580 bytes in 11,673 blocks ==2444971== total heap usage: 16,194,094 allocs, 16,182,421 frees, 3,031,634,621 bytes allocated ==2444971== ==2444971== LEAK SUMMARY: ==2444971== definitely lost: 0 bytes in 0 blocks ==2444971== indirectly lost: 0 bytes in 0 blocks ==2444971== possibly lost: 0 bytes in 0 blocks ==2444971== still reachable: 56 bytes in 3 blocks ==2444971== suppressed: 835,524 bytes in 11,670 blocks ==2444971== Reachable blocks (those to which a pointer was found) are not shown. ==2444971== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2444971== ==2444971== For lists of detected and suppressed errors, rerun with: -s ==2444971== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)