==2512459== Memcheck, a memory error detector ==2512459== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2512459== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2512459== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info ==2512459== Parent PID: 2510676 ==2512459== ==2512459== ==2512459== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2512459== Open file descriptor 12: ==2512459== at 0xEB7207D: pipe (pipe.c:29) ==2512459== by 0x18A1C07D: ??? ==2512459== by 0x1402D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2512459== by 0x10813418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2512459== by 0x107ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2512459== by 0xF4A3D38: PetscInitialize (pinit.c:924) ==2512459== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2512459== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2512459== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2512459== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2512459== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2512459== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2512459== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2512459== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==2512459== ==2512459== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2512459== at 0xEB76A1C: __open_nocancel (open64_nocancel.c:39) ==2512459== by 0xEAFABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2512459== by 0xE4A5822: ??? ==2512459== by 0xE4A596F: ??? ==2512459== by 0x140D26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2512459== by 0x140D2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2512459== by 0x14088922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2512459== by 0x1402D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2512459== by 0x10813418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2512459== by 0x107ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2512459== by 0xF4A3D38: PetscInitialize (pinit.c:924) ==2512459== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2512459== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2512459== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2512459== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2512459== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2512459== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2512459== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2512459== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==2512459== ==2512459== Open file descriptor 115: ==2512459== ==2512459== ==2512459== Open file descriptor 109: ==2512459== ==2512459== ==2512459== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt ==2512459== ==2512459== ==2512459== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2512459== ==2512459== ==2512459== ==2512459== HEAP SUMMARY: ==2512459== in use at exit: 835,633 bytes in 11,677 blocks ==2512459== total heap usage: 1,132,997 allocs, 1,121,320 frees, 1,617,729,593 bytes allocated ==2512459== ==2512459== LEAK SUMMARY: ==2512459== definitely lost: 0 bytes in 0 blocks ==2512459== indirectly lost: 0 bytes in 0 blocks ==2512459== possibly lost: 0 bytes in 0 blocks ==2512459== still reachable: 56 bytes in 3 blocks ==2512459== suppressed: 835,577 bytes in 11,674 blocks ==2512459== Reachable blocks (those to which a pointer was found) are not shown. ==2512459== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2512459== ==2512459== For lists of detected and suppressed errors, rerun with: -s ==2512459== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)