==2526669== Memcheck, a memory error detector ==2526669== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2526669== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2526669== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==2526669== Parent PID: 2510676 ==2526669== ==2526669== ==2526669== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2526669== Open file descriptor 12: ==2526669== at 0x118E907D: pipe (pipe.c:29) ==2526669== by 0x1A6DC07D: ??? ==2526669== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2526669== by 0x111F1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2526669== by 0x1118AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2526669== by 0xFE53D38: PetscInitialize (pinit.c:924) ==2526669== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2526669== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2526669== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2526669== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2526669== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2526669== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2526669== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2526669== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==2526669== ==2526669== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2526669== at 0x118EDA1C: __open_nocancel (open64_nocancel.c:39) ==2526669== by 0x11871BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2526669== by 0x110E3822: ??? ==2526669== by 0x110E396F: ??? ==2526669== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2526669== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2526669== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2526669== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2526669== by 0x111F1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2526669== by 0x1118AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2526669== by 0xFE53D38: PetscInitialize (pinit.c:924) ==2526669== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2526669== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2526669== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2526669== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2526669== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2526669== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2526669== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2526669== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==2526669== ==2526669== Open file descriptor 115: ==2526669== ==2526669== ==2526669== Open file descriptor 109: ==2526669== ==2526669== ==2526669== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt ==2526669== ==2526669== ==2526669== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2526669== ==2526669== ==2526669== ==2526669== HEAP SUMMARY: ==2526669== in use at exit: 835,649 bytes in 11,677 blocks ==2526669== total heap usage: 1,761,713 allocs, 1,750,036 frees, 1,716,716,085 bytes allocated ==2526669== ==2526669== LEAK SUMMARY: ==2526669== definitely lost: 0 bytes in 0 blocks ==2526669== indirectly lost: 0 bytes in 0 blocks ==2526669== possibly lost: 0 bytes in 0 blocks ==2526669== still reachable: 56 bytes in 3 blocks ==2526669== suppressed: 835,593 bytes in 11,674 blocks ==2526669== Reachable blocks (those to which a pointer was found) are not shown. ==2526669== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2526669== ==2526669== For lists of detected and suppressed errors, rerun with: -s ==2526669== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)