==2048706== Memcheck, a memory error detector ==2048706== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2048706== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2048706== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info ==2048706== Parent PID: 2046931 ==2048706== ==2048706== ==2048706== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2048706== Open file descriptor 12: ==2048706== at 0xF4AD26D: pipe (pipe.c:29) ==2048706== by 0x1976E07D: ??? ==2048706== by 0x14D0D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2048706== by 0x1114A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2048706== by 0x110E3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2048706== by 0xFDDAD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2048706== by 0xF0F52DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2048706== by 0xF0F532D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2048706== by 0x12211E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2048706== by 0x11D8CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2048706== by 0x11FC58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2048706== by 0x11FAF8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2048706== by 0x12018F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2048706== by 0x11BCF5: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==2048706== ==2048706== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2048706== at 0xF4B1C0C: __open_nocancel (open64_nocancel.c:39) ==2048706== by 0xF435BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2048706== by 0xF12A822: ??? ==2048706== by 0xF12A96F: ??? ==2048706== by 0x14DB26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2048706== by 0x14DB2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2048706== by 0x14D68922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2048706== by 0x14D0D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2048706== by 0x1114A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2048706== by 0x110E3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2048706== by 0xFDDAD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2048706== by 0xF0F52DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2048706== by 0xF0F532D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2048706== by 0x12211E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2048706== by 0x11D8CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2048706== by 0x11FC58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2048706== by 0x11FAF8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2048706== by 0x12018F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2048706== by 0x11BCF5: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==2048706== ==2048706== Open file descriptor 115: ==2048706== ==2048706== ==2048706== Open file descriptor 112: ==2048706== ==2048706== ==2048706== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt ==2048706== ==2048706== ==2048706== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2048706== ==2048706== ==2048706== ==2048706== HEAP SUMMARY: ==2048706== in use at exit: 858,024 bytes in 12,113 blocks ==2048706== total heap usage: 1,078,413 allocs, 1,066,300 frees, 1,618,006,092 bytes allocated ==2048706== ==2048706== LEAK SUMMARY: ==2048706== definitely lost: 0 bytes in 0 blocks ==2048706== indirectly lost: 0 bytes in 0 blocks ==2048706== possibly lost: 0 bytes in 0 blocks ==2048706== still reachable: 56 bytes in 3 blocks ==2048706== suppressed: 857,968 bytes in 12,110 blocks ==2048706== Reachable blocks (those to which a pointer was found) are not shown. ==2048706== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2048706== ==2048706== For lists of detected and suppressed errors, rerun with: -s ==2048706== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)