==2055972== Memcheck, a memory error detector ==2055972== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2055972== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2055972== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==2055972== Parent PID: 2046931 ==2055972== ==2055972== ==2055972== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2055972== Open file descriptor 12: ==2055972== at 0x10E9726D: pipe (pipe.c:29) ==2055972== by 0x1B42E07D: ??? ==2055972== by 0x165CA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2055972== by 0x12AF2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2055972== by 0x12A8BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2055972== by 0x11782D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2055972== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2055972== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2055972== by 0x23B2C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2055972== by 0x2317F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2055972== by 0x235EC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2055972== by 0x235D66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2055972== by 0x2363FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2055972== by 0x22FC15: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==2055972== ==2055972== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2055972== at 0x10E9BC0C: __open_nocancel (open64_nocancel.c:39) ==2055972== by 0x10E1FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2055972== by 0x109E9822: ??? ==2055972== by 0x109E996F: ??? ==2055972== by 0x1666F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2055972== by 0x1666F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2055972== by 0x16625922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2055972== by 0x165CA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2055972== by 0x12AF2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2055972== by 0x12A8BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2055972== by 0x11782D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2055972== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2055972== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2055972== by 0x23B2C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2055972== by 0x2317F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2055972== by 0x235EC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2055972== by 0x235D66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2055972== by 0x2363FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2055972== by 0x22FC15: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==2055972== ==2055972== Open file descriptor 115: ==2055972== ==2055972== ==2055972== Open file descriptor 112: ==2055972== ==2055972== ==2055972== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==2055972== ==2055972== ==2055972== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2055972== ==2055972== ==2055972== ==2055972== HEAP SUMMARY: ==2055972== in use at exit: 857,977 bytes in 12,109 blocks ==2055972== total heap usage: 6,192,363 allocs, 6,180,254 frees, 2,256,618,118 bytes allocated ==2055972== ==2055972== LEAK SUMMARY: ==2055972== definitely lost: 0 bytes in 0 blocks ==2055972== indirectly lost: 0 bytes in 0 blocks ==2055972== possibly lost: 0 bytes in 0 blocks ==2055972== still reachable: 56 bytes in 3 blocks ==2055972== suppressed: 857,921 bytes in 12,106 blocks ==2055972== Reachable blocks (those to which a pointer was found) are not shown. ==2055972== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2055972== ==2055972== For lists of detected and suppressed errors, rerun with: -s ==2055972== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)