==2083670== Memcheck, a memory error detector ==2083670== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2083670== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2083670== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==2083670== Parent PID: 2074753 ==2083670== ==2083670== ==2083670== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2083670== Open file descriptor 12: ==2083670== at 0x1020D26D: pipe (pipe.c:29) ==2083670== by 0x1A7A407D: ??? ==2083670== by 0x159404CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2083670== by 0x11E68418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083670== by 0x11E01D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083670== by 0x10AF8D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2083670== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2083670== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2083670== by 0x23B2C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2083670== by 0x2317F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2083670== by 0x235EC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2083670== by 0x235D66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2083670== by 0x2363FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2083670== by 0x22FC15: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==2083670== ==2083670== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2083670== at 0x10211C0C: __open_nocancel (open64_nocancel.c:39) ==2083670== by 0x10195BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2083670== by 0xFD5F822: ??? ==2083670== by 0xFD5F96F: ??? ==2083670== by 0x159E56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2083670== by 0x159E5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2083670== by 0x1599B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2083670== by 0x159402DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2083670== by 0x11E68418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083670== by 0x11E01D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083670== by 0x10AF8D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2083670== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2083670== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2083670== by 0x23B2C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2083670== by 0x2317F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2083670== by 0x235EC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2083670== by 0x235D66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2083670== by 0x2363FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2083670== by 0x22FC15: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==2083670== ==2083670== Open file descriptor 115: ==2083670== ==2083670== ==2083670== Open file descriptor 112: ==2083670== ==2083670== ==2083670== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==2083670== ==2083670== ==2083670== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2083670== ==2083670== ==2083670== ==2083670== HEAP SUMMARY: ==2083670== in use at exit: 857,977 bytes in 12,109 blocks ==2083670== total heap usage: 6,254,042 allocs, 6,241,933 frees, 2,257,817,251 bytes allocated ==2083670== ==2083670== LEAK SUMMARY: ==2083670== definitely lost: 0 bytes in 0 blocks ==2083670== indirectly lost: 0 bytes in 0 blocks ==2083670== possibly lost: 0 bytes in 0 blocks ==2083670== still reachable: 56 bytes in 3 blocks ==2083670== suppressed: 857,921 bytes in 12,106 blocks ==2083670== Reachable blocks (those to which a pointer was found) are not shown. ==2083670== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2083670== ==2083670== For lists of detected and suppressed errors, rerun with: -s ==2083670== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)