==2083672== Memcheck, a memory error detector ==2083672== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2083672== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2083672== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==2083672== Parent PID: 2074753 ==2083672== ==2083672== ==2083672== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2083672== Open file descriptor 12: ==2083672== at 0x115DB26D: pipe (pipe.c:29) ==2083672== by 0x1A7A207D: ??? ==2083672== by 0x158F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2083672== by 0x11228418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083672== by 0x111C1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083672== by 0xFEB8D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2083672== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2083672== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2083672== by 0x2243BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2083672== by 0x21BE39: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2083672== by 0x21F9DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2083672== by 0x21F87C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2083672== by 0x21FF13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2083672== by 0x21A255: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==2083672== ==2083672== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2083672== at 0x115DFC0C: __open_nocancel (open64_nocancel.c:39) ==2083672== by 0x11563BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2083672== by 0xFD5F822: ??? ==2083672== by 0xFD5F96F: ??? ==2083672== by 0x159986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2083672== by 0x15998938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2083672== by 0x1594E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2083672== by 0x158F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2083672== by 0x11228418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083672== by 0x111C1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083672== by 0xFEB8D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2083672== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2083672== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2083672== by 0x2243BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2083672== by 0x21BE39: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2083672== by 0x21F9DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2083672== by 0x21F87C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2083672== by 0x21FF13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2083672== by 0x21A255: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==2083672== ==2083672== Open file descriptor 115: ==2083672== ==2083672== ==2083672== Open file descriptor 112: ==2083672== ==2083672== ==2083672== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==2083672== ==2083672== ==2083672== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2083672== ==2083672== ==2083672== ==2083672== HEAP SUMMARY: ==2083672== in use at exit: 857,977 bytes in 12,109 blocks ==2083672== total heap usage: 3,316,947 allocs, 3,304,838 frees, 1,806,697,421 bytes allocated ==2083672== ==2083672== LEAK SUMMARY: ==2083672== definitely lost: 0 bytes in 0 blocks ==2083672== indirectly lost: 0 bytes in 0 blocks ==2083672== possibly lost: 0 bytes in 0 blocks ==2083672== still reachable: 56 bytes in 3 blocks ==2083672== suppressed: 857,921 bytes in 12,106 blocks ==2083672== Reachable blocks (those to which a pointer was found) are not shown. ==2083672== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2083672== ==2083672== For lists of detected and suppressed errors, rerun with: -s ==2083672== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)