==2083853== Memcheck, a memory error detector ==2083853== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2083853== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2083853== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==2083853== Parent PID: 2074753 ==2083853== ==2083853== ==2083853== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2083853== Open file descriptor 12: ==2083853== at 0x1159926D: pipe (pipe.c:29) ==2083853== by 0x1A7A207D: ??? ==2083853== by 0x158F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2083853== by 0x111E6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083853== by 0x1117FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083853== by 0xFE53D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2083853== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2083853== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2083853== by 0x120D67: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2083853== by 0x11C5F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2083853== by 0x11E82A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2083853== by 0x11E726: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2083853== by 0x11ED39: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2083853== by 0x11ADF5: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==2083853== ==2083853== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2083853== at 0x1159DC0C: __open_nocancel (open64_nocancel.c:39) ==2083853== by 0x11521BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2083853== by 0x110DD822: ??? ==2083853== by 0x110DD96F: ??? ==2083853== by 0x159986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2083853== by 0x15998938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2083853== by 0x1594E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2083853== by 0x158F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2083853== by 0x111E6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083853== by 0x1117FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083853== by 0xFE53D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2083853== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2083853== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2083853== by 0x120D67: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2083853== by 0x11C5F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2083853== by 0x11E82A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2083853== by 0x11E726: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2083853== by 0x11ED39: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2083853== by 0x11ADF5: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==2083853== ==2083853== Open file descriptor 115: ==2083853== ==2083853== ==2083853== Open file descriptor 112: ==2083853== ==2083853== ==2083853== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt ==2083853== ==2083853== ==2083853== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2083853== ==2083853== ==2083853== ==2083853== HEAP SUMMARY: ==2083853== in use at exit: 857,977 bytes in 12,109 blocks ==2083853== total heap usage: 1,781,211 allocs, 1,769,102 frees, 1,719,746,360 bytes allocated ==2083853== ==2083853== LEAK SUMMARY: ==2083853== definitely lost: 0 bytes in 0 blocks ==2083853== indirectly lost: 0 bytes in 0 blocks ==2083853== possibly lost: 0 bytes in 0 blocks ==2083853== still reachable: 56 bytes in 3 blocks ==2083853== suppressed: 857,921 bytes in 12,106 blocks ==2083853== Reachable blocks (those to which a pointer was found) are not shown. ==2083853== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2083853== ==2083853== For lists of detected and suppressed errors, rerun with: -s ==2083853== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)