==2680633== Memcheck, a memory error detector ==2680633== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2680633== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2680633== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info ==2680633== Parent PID: 2678878 ==2680633== ==2680633== ==2680633== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2680633== Open file descriptor 12: ==2680633== at 0xEB7807D: pipe (pipe.c:29) ==2680633== by 0x18A2207D: ??? ==2680633== by 0x140334CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2680633== by 0x10819418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2680633== by 0x107B2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2680633== by 0xF4A9D38: PetscInitialize (pinit.c:924) ==2680633== by 0xE471153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2680633== by 0xE4711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2680633== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2680633== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2680633== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2680633== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2680633== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2680633== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==2680633== ==2680633== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2680633== at 0xEB7CA1C: __open_nocancel (open64_nocancel.c:39) ==2680633== by 0xEB00BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2680633== by 0xE4AB822: ??? ==2680633== by 0xE4AB96F: ??? ==2680633== by 0x140D86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2680633== by 0x140D8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2680633== by 0x1408E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2680633== by 0x140332DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2680633== by 0x10819418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2680633== by 0x107B2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2680633== by 0xF4A9D38: PetscInitialize (pinit.c:924) ==2680633== by 0xE471153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2680633== by 0xE4711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2680633== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2680633== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2680633== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2680633== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2680633== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2680633== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==2680633== ==2680633== Open file descriptor 115: ==2680633== ==2680633== ==2680633== Open file descriptor 112: ==2680633== ==2680633== ==2680633== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt ==2680633== ==2680633== ==2680633== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2680633== ==2680633== ==2680633== ==2680633== HEAP SUMMARY: ==2680633== in use at exit: 835,633 bytes in 11,677 blocks ==2680633== total heap usage: 1,132,710 allocs, 1,121,033 frees, 1,617,689,400 bytes allocated ==2680633== ==2680633== LEAK SUMMARY: ==2680633== definitely lost: 0 bytes in 0 blocks ==2680633== indirectly lost: 0 bytes in 0 blocks ==2680633== possibly lost: 0 bytes in 0 blocks ==2680633== still reachable: 56 bytes in 3 blocks ==2680633== suppressed: 835,577 bytes in 11,674 blocks ==2680633== Reachable blocks (those to which a pointer was found) are not shown. ==2680633== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2680633== ==2680633== For lists of detected and suppressed errors, rerun with: -s ==2680633== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 43)