==2696835== Memcheck, a memory error detector ==2696835== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2696835== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2696835== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==2696835== Parent PID: 2678878 ==2696835== ==2696835== Warning: invalid file descriptor -1 in syscall close() ==2696835== ==2696835== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2696835== Open file descriptor 12: ==2696835== at 0xBD8107D: pipe (pipe.c:29) ==2696835== by 0x13F9A07D: ??? ==2696835== by 0xFC6E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2696835== by 0xB66F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2696835== by 0xB608D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2696835== by 0x9F4AD38: PetscInitialize (pinit.c:924) ==2696835== by 0x9DB0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2696835== by 0x9DB01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2696835== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2696835== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2696835== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2696835== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2696835== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2696835== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==2696835== ==2696835== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2696835== at 0xBD85A1C: __open_nocancel (open64_nocancel.c:39) ==2696835== by 0xBD09BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2696835== by 0x9DEA822: ??? ==2696835== by 0x9DEA96F: ??? ==2696835== by 0xFD136DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2696835== by 0xFD13938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2696835== by 0xFCC9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2696835== by 0xFC6E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2696835== by 0xB66F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2696835== by 0xB608D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2696835== by 0x9F4AD38: PetscInitialize (pinit.c:924) ==2696835== by 0x9DB0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2696835== by 0x9DB01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2696835== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2696835== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2696835== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2696835== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2696835== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2696835== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==2696835== ==2696835== Open file descriptor 115: ==2696835== ==2696835== ==2696835== Open file descriptor 112: ==2696835== ==2696835== ==2696835== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==2696835== ==2696835== ==2696835== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2696835== ==2696835== ==2696835== ==2696835== HEAP SUMMARY: ==2696835== in use at exit: 836,028 bytes in 11,682 blocks ==2696835== total heap usage: 6,626,352 allocs, 6,614,670 frees, 4,220,342,157 bytes allocated ==2696835== ==2696835== LEAK SUMMARY: ==2696835== definitely lost: 0 bytes in 0 blocks ==2696835== indirectly lost: 0 bytes in 0 blocks ==2696835== possibly lost: 0 bytes in 0 blocks ==2696835== still reachable: 24 bytes in 2 blocks ==2696835== suppressed: 836,004 bytes in 11,680 blocks ==2696835== Reachable blocks (those to which a pointer was found) are not shown. ==2696835== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2696835== ==2696835== For lists of detected and suppressed errors, rerun with: -s ==2696835== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34)