==2117583== Memcheck, a memory error detector ==2117583== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2117583== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2117583== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==2117583== Parent PID: 2115830 ==2117583== ==2117583== ==2117583== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2117583== Open file descriptor 12: ==2117583== at 0xFE0326D: pipe (pipe.c:29) ==2117583== by 0x18AE507D: ??? ==2117583== by 0x1402F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2117583== by 0xF969418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2117583== by 0xF902D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2117583== by 0xE5F9D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2117583== by 0xE46C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2117583== by 0xE46C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2117583== by 0x1FF445: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2117583== by 0x1F941F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2117583== by 0x1FC6D0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2117583== by 0x1FC5CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2117583== by 0x1FCBDF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2117583== by 0x1F7C15: main (TestOffLatticeSimulation3d.cpp:18) ==2117583== ==2117583== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2117583== at 0xFE07C0C: __open_nocancel (open64_nocancel.c:39) ==2117583== by 0xFD8BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2117583== by 0xE4A0822: ??? ==2117583== by 0xE4A096F: ??? ==2117583== by 0x140D66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2117583== by 0x140D6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2117583== by 0x1408C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2117583== by 0x1402F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2117583== by 0xF969418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2117583== by 0xF902D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2117583== by 0xE5F9D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2117583== by 0xE46C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2117583== by 0xE46C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2117583== by 0x1FF445: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2117583== by 0x1F941F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2117583== by 0x1FC6D0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2117583== by 0x1FC5CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2117583== by 0x1FCBDF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2117583== by 0x1F7C15: main (TestOffLatticeSimulation3d.cpp:18) ==2117583== ==2117583== Open file descriptor 115: ==2117583== ==2117583== ==2117583== Open file descriptor 112: ==2117583== ==2117583== ==2117583== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==2117583== ==2117583== ==2117583== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2117583== ==2117583== ==2117583== ==2117583== HEAP SUMMARY: ==2117583== in use at exit: 858,024 bytes in 12,113 blocks ==2117583== total heap usage: 838,754 allocs, 826,641 frees, 1,707,048,385 bytes allocated ==2117583== ==2117583== LEAK SUMMARY: ==2117583== definitely lost: 0 bytes in 0 blocks ==2117583== indirectly lost: 0 bytes in 0 blocks ==2117583== possibly lost: 0 bytes in 0 blocks ==2117583== still reachable: 56 bytes in 3 blocks ==2117583== suppressed: 857,968 bytes in 12,110 blocks ==2117583== Reachable blocks (those to which a pointer was found) are not shown. ==2117583== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2117583== ==2117583== For lists of detected and suppressed errors, rerun with: -s ==2117583== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)