==2149897== Memcheck, a memory error detector ==2149897== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2149897== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2149897== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==2149897== Parent PID: 2139074 ==2149897== ==2149897== Warning: invalid file descriptor -1 in syscall close() ==2149897== ==2149897== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2149897== Open file descriptor 12: ==2149897== at 0xBA2826D: pipe (pipe.c:29) ==2149897== by 0x1405907D: ??? ==2149897== by 0xFD094CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2149897== by 0xB65D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2149897== by 0xB5F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2149897== by 0x9F38D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2149897== by 0x9DA9153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2149897== by 0x9DA91A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2149897== by 0x14A212: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2149897== by 0x1417ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2149897== by 0x14497C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2149897== by 0x14481C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2149897== by 0x144EB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2149897== by 0x13FBC5: main (TestMonodomainProblem.cpp:19) ==2149897== ==2149897== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2149897== at 0xBA2CC0C: __open_nocancel (open64_nocancel.c:39) ==2149897== by 0xB9B0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2149897== by 0x9DDD822: ??? ==2149897== by 0x9DDD96F: ??? ==2149897== by 0xFDAE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2149897== by 0xFDAE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2149897== by 0xFD64922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2149897== by 0xFD092DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2149897== by 0xB65D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2149897== by 0xB5F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2149897== by 0x9F38D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2149897== by 0x9DA9153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2149897== by 0x9DA91A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2149897== by 0x14A212: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2149897== by 0x1417ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2149897== by 0x14497C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2149897== by 0x14481C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2149897== by 0x144EB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2149897== by 0x13FBC5: main (TestMonodomainProblem.cpp:19) ==2149897== ==2149897== Open file descriptor 115: ==2149897== ==2149897== ==2149897== Open file descriptor 112: ==2149897== ==2149897== ==2149897== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==2149897== ==2149897== ==2149897== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2149897== ==2149897== ==2149897== ==2149897== HEAP SUMMARY: ==2149897== in use at exit: 858,425 bytes in 12,118 blocks ==2149897== total heap usage: 6,271,175 allocs, 6,259,057 frees, 4,206,222,202 bytes allocated ==2149897== ==2149897== LEAK SUMMARY: ==2149897== definitely lost: 0 bytes in 0 blocks ==2149897== indirectly lost: 0 bytes in 0 blocks ==2149897== possibly lost: 0 bytes in 0 blocks ==2149897== still reachable: 24 bytes in 2 blocks ==2149897== suppressed: 858,401 bytes in 12,116 blocks ==2149897== Reachable blocks (those to which a pointer was found) are not shown. ==2149897== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2149897== ==2149897== For lists of detected and suppressed errors, rerun with: -s ==2149897== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 114 from 20)