==2140534== Memcheck, a memory error detector ==2140534== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2140534== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2140534== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==2140534== Parent PID: 2139074 ==2140534== ==2140534== ==2140534== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2140534== Open file descriptor 12: ==2140534== at 0xD24D26D: pipe (pipe.c:29) ==2140534== by 0x18AE007D: ??? ==2140534== by 0x1407D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2140534== by 0x104BB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2140534== by 0x10454D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2140534== by 0xF14BD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2140534== by 0xCE54153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2140534== by 0xCE541A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2140534== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2140534== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2140534== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2140534== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2140534== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2140534== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==2140534== ==2140534== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2140534== at 0xD251C0C: __open_nocancel (open64_nocancel.c:39) ==2140534== by 0xD1D5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2140534== by 0xCE88822: ??? ==2140534== by 0xCE8896F: ??? ==2140534== by 0x141226DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2140534== by 0x14122938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2140534== by 0x140D8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2140534== by 0x1407D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2140534== by 0x104BB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2140534== by 0x10454D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2140534== by 0xF14BD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2140534== by 0xCE54153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2140534== by 0xCE541A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2140534== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2140534== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2140534== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2140534== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2140534== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2140534== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==2140534== ==2140534== Open file descriptor 115: ==2140534== ==2140534== ==2140534== Open file descriptor 112: ==2140534== ==2140534== ==2140534== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==2140534== ==2140534== ==2140534== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2140534== ==2140534== ==2140534== ==2140534== HEAP SUMMARY: ==2140534== in use at exit: 857,992 bytes in 12,112 blocks ==2140534== total heap usage: 66,526 allocs, 54,414 frees, 1,543,733,034 bytes allocated ==2140534== ==2140534== LEAK SUMMARY: ==2140534== definitely lost: 0 bytes in 0 blocks ==2140534== indirectly lost: 0 bytes in 0 blocks ==2140534== possibly lost: 0 bytes in 0 blocks ==2140534== still reachable: 24 bytes in 2 blocks ==2140534== suppressed: 857,968 bytes in 12,110 blocks ==2140534== Reachable blocks (those to which a pointer was found) are not shown. ==2140534== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2140534== ==2140534== For lists of detected and suppressed errors, rerun with: -s ==2140534== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)