==2814676== Memcheck, a memory error detector ==2814676== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2814676== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2814676== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==2814676== Parent PID: 2798721 ==2814676== ==2814676== ==2814676== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2814676== Open file descriptor 12: ==2814676== at 0x111ED07D: pipe (pipe.c:29) ==2814676== by 0x1B36D07D: ??? ==2814676== by 0x165854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2814676== by 0x12E4A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2814676== by 0x12DE3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2814676== by 0x11ADAD38: PetscInitialize (pinit.c:924) ==2814676== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2814676== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2814676== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2814676== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2814676== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2814676== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2814676== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2814676== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==2814676== ==2814676== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2814676== at 0x111F1A1C: __open_nocancel (open64_nocancel.c:39) ==2814676== by 0x11175BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2814676== by 0x109F5822: ??? ==2814676== by 0x109F596F: ??? ==2814676== by 0x1662A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2814676== by 0x1662A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2814676== by 0x165E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2814676== by 0x165852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2814676== by 0x12E4A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2814676== by 0x12DE3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2814676== by 0x11ADAD38: PetscInitialize (pinit.c:924) ==2814676== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2814676== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2814676== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2814676== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2814676== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2814676== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2814676== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2814676== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==2814676== ==2814676== Open file descriptor 115: ==2814676== ==2814676== ==2814676== Open file descriptor 112: ==2814676== ==2814676== ==2814676== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==2814676== ==2814676== ==2814676== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2814676== ==2814676== ==2814676== ==2814676== HEAP SUMMARY: ==2814676== in use at exit: 835,580 bytes in 11,673 blocks ==2814676== total heap usage: 6,319,811 allocs, 6,308,138 frees, 2,259,510,948 bytes allocated ==2814676== ==2814676== LEAK SUMMARY: ==2814676== definitely lost: 0 bytes in 0 blocks ==2814676== indirectly lost: 0 bytes in 0 blocks ==2814676== possibly lost: 0 bytes in 0 blocks ==2814676== still reachable: 56 bytes in 3 blocks ==2814676== suppressed: 835,524 bytes in 11,670 blocks ==2814676== Reachable blocks (those to which a pointer was found) are not shown. ==2814676== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2814676== ==2814676== For lists of detected and suppressed errors, rerun with: -s ==2814676== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)