==2814807== Memcheck, a memory error detector ==2814807== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2814807== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2814807== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==2814807== Parent PID: 2798721 ==2814807== ==2814807== ==2814807== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2814807== Open file descriptor 12: ==2814807== at 0x1257907D: pipe (pipe.c:29) ==2814807== by 0x1B36D07D: ??? ==2814807== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2814807== by 0x11E81418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2814807== by 0x11E1AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2814807== by 0x10AE3D38: PetscInitialize (pinit.c:924) ==2814807== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2814807== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2814807== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2814807== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2814807== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2814807== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2814807== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2814807== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==2814807== ==2814807== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2814807== at 0x1257DA1C: __open_nocancel (open64_nocancel.c:39) ==2814807== by 0x12501BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2814807== by 0x11D73822: ??? ==2814807== by 0x11D7396F: ??? ==2814807== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2814807== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2814807== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2814807== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2814807== by 0x11E81418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2814807== by 0x11E1AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2814807== by 0x10AE3D38: PetscInitialize (pinit.c:924) ==2814807== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2814807== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2814807== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2814807== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2814807== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2814807== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2814807== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2814807== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==2814807== ==2814807== Open file descriptor 115: ==2814807== ==2814807== ==2814807== Open file descriptor 112: ==2814807== ==2814807== ==2814807== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==2814807== ==2814807== ==2814807== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2814807== ==2814807== ==2814807== ==2814807== HEAP SUMMARY: ==2814807== in use at exit: 835,580 bytes in 11,673 blocks ==2814807== total heap usage: 16,194,630 allocs, 16,182,957 frees, 3,031,682,979 bytes allocated ==2814807== ==2814807== LEAK SUMMARY: ==2814807== definitely lost: 0 bytes in 0 blocks ==2814807== indirectly lost: 0 bytes in 0 blocks ==2814807== possibly lost: 0 bytes in 0 blocks ==2814807== still reachable: 56 bytes in 3 blocks ==2814807== suppressed: 835,524 bytes in 11,670 blocks ==2814807== Reachable blocks (those to which a pointer was found) are not shown. ==2814807== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2814807== ==2814807== For lists of detected and suppressed errors, rerun with: -s ==2814807== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)