==2200233== Memcheck, a memory error detector ==2200233== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2200233== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2200233== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==2200233== Parent PID: 2198732 ==2200233== ==2200233== ==2200233== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2200233== Open file descriptor 12: ==2200233== at 0xEF8F26D: pipe (pipe.c:29) ==2200233== by 0x1976C07D: ??? ==2200233== by 0x139044CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2200233== by 0xEBDC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2200233== by 0xEB75D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2200233== by 0xD86CD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2200233== by 0xD6DE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2200233== by 0xD6DE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2200233== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2200233== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2200233== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2200233== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2200233== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2200233== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==2200233== ==2200233== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2200233== at 0xEF93C0C: __open_nocancel (open64_nocancel.c:39) ==2200233== by 0xEF17BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2200233== by 0xD713822: ??? ==2200233== by 0xD71396F: ??? ==2200233== by 0x139A96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2200233== by 0x139A9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2200233== by 0x1395F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2200233== by 0x139042DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2200233== by 0xEBDC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2200233== by 0xEB75D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2200233== by 0xD86CD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2200233== by 0xD6DE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2200233== by 0xD6DE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2200233== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2200233== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2200233== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2200233== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2200233== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2200233== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==2200233== ==2200233== Open file descriptor 115: ==2200233== ==2200233== ==2200233== Open file descriptor 112: ==2200233== ==2200233== ==2200233== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==2200233== ==2200233== ==2200233== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2200233== ==2200233== ==2200233== ==2200233== HEAP SUMMARY: ==2200233== in use at exit: 857,992 bytes in 12,112 blocks ==2200233== total heap usage: 174,758 allocs, 162,646 frees, 1,554,108,935 bytes allocated ==2200233== ==2200233== LEAK SUMMARY: ==2200233== definitely lost: 0 bytes in 0 blocks ==2200233== indirectly lost: 0 bytes in 0 blocks ==2200233== possibly lost: 0 bytes in 0 blocks ==2200233== still reachable: 24 bytes in 2 blocks ==2200233== suppressed: 857,968 bytes in 12,110 blocks ==2200233== Reachable blocks (those to which a pointer was found) are not shown. ==2200233== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2200233== ==2200233== For lists of detected and suppressed errors, rerun with: -s ==2200233== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)