==2200458== Memcheck, a memory error detector ==2200458== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2200458== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2200458== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==2200458== Parent PID: 2198732 ==2200458== ==2200458== ==2200458== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2200458== Open file descriptor 12: ==2200458== at 0xF57E26D: pipe (pipe.c:29) ==2200458== by 0x1976E07D: ??? ==2200458== by 0x14D0D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2200458== by 0x1114A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2200458== by 0x110E3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2200458== by 0xFDDAD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2200458== by 0xF1842DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2200458== by 0xF18432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2200458== by 0x2E24DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2200458== by 0x2D9039: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2200458== by 0x2DD832: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2200458== by 0x2DD6D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2200458== by 0x2DDD69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2200458== by 0x2D7455: main (TestNodeBasedCellPopulation.cpp:19) ==2200458== ==2200458== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2200458== at 0xF582C0C: __open_nocancel (open64_nocancel.c:39) ==2200458== by 0xF506BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2200458== by 0xF1B9822: ??? ==2200458== by 0xF1B996F: ??? ==2200458== by 0x14DB26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2200458== by 0x14DB2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2200458== by 0x14D68922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2200458== by 0x14D0D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2200458== by 0x1114A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2200458== by 0x110E3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2200458== by 0xFDDAD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2200458== by 0xF1842DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2200458== by 0xF18432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2200458== by 0x2E24DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2200458== by 0x2D9039: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2200458== by 0x2DD832: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2200458== by 0x2DD6D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2200458== by 0x2DDD69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2200458== by 0x2D7455: main (TestNodeBasedCellPopulation.cpp:19) ==2200458== ==2200458== Open file descriptor 115: ==2200458== ==2200458== ==2200458== Open file descriptor 112: ==2200458== ==2200458== ==2200458== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt ==2200458== ==2200458== ==2200458== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2200458== ==2200458== ==2200458== ==2200458== HEAP SUMMARY: ==2200458== in use at exit: 857,961 bytes in 12,109 blocks ==2200458== total heap usage: 20,199,969 allocs, 20,187,860 frees, 2,767,325,447 bytes allocated ==2200458== ==2200458== LEAK SUMMARY: ==2200458== definitely lost: 0 bytes in 0 blocks ==2200458== indirectly lost: 0 bytes in 0 blocks ==2200458== possibly lost: 0 bytes in 0 blocks ==2200458== still reachable: 56 bytes in 3 blocks ==2200458== suppressed: 857,905 bytes in 12,106 blocks ==2200458== Reachable blocks (those to which a pointer was found) are not shown. ==2200458== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2200458== ==2200458== For lists of detected and suppressed errors, rerun with: -s ==2200458== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)