==1490607== Memcheck, a memory error detector ==1490607== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1490607== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1490607== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==1490607== Parent PID: 1488630 ==1490607== ==1490607== ==1490607== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1490607== Open file descriptor 12: ==1490607== at 0xEC9507D: pipe (pipe.c:29) ==1490607== by 0x18A1D07D: ??? ==1490607== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1490607== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1490607== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1490607== by 0xF582D38: PetscInitialize (pinit.c:924) ==1490607== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1490607== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1490607== by 0x213670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1490607== by 0x20AE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1490607== by 0x20EA68: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1490607== by 0x20E908: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1490607== by 0x20EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1490607== by 0x209235: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) ==1490607== ==1490607== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1490607== at 0xEC99A1C: __open_nocancel (open64_nocancel.c:39) ==1490607== by 0xEC1DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1490607== by 0xE49F822: ??? ==1490607== by 0xE49F96F: ??? ==1490607== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1490607== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1490607== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1490607== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1490607== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1490607== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1490607== by 0xF582D38: PetscInitialize (pinit.c:924) ==1490607== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1490607== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1490607== by 0x213670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1490607== by 0x20AE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1490607== by 0x20EA68: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1490607== by 0x20E908: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1490607== by 0x20EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1490607== by 0x209235: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) ==1490607== ==1490607== Open file descriptor 115: ==1490607== ==1490607== ==1490607== Open file descriptor 112: ==1490607== ==1490607== ==1490607== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt ==1490607== ==1490607== ==1490607== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1490607== ==1490607== ==1490607== ==1490607== HEAP SUMMARY: ==1490607== in use at exit: 995,558 bytes in 13,911 blocks ==1490607== total heap usage: 17,984,834 allocs, 17,970,923 frees, 30,304,634,766 bytes allocated ==1490607== ==1490607== LEAK SUMMARY: ==1490607== definitely lost: 0 bytes in 0 blocks ==1490607== indirectly lost: 0 bytes in 0 blocks ==1490607== possibly lost: 0 bytes in 0 blocks ==1490607== still reachable: 88 bytes in 4 blocks ==1490607== suppressed: 995,470 bytes in 13,907 blocks ==1490607== Reachable blocks (those to which a pointer was found) are not shown. ==1490607== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1490607== ==1490607== For lists of detected and suppressed errors, rerun with: -s ==1490607== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)