==1490152== Memcheck, a memory error detector ==1490152== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1490152== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1490152== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==1490152== Parent PID: 1488630 ==1490152== ==1490152== ==1490152== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1490152== Open file descriptor 12: ==1490152== at 0xD25407D: pipe (pipe.c:29) ==1490152== by 0x18A1E07D: ??? ==1490152== by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1490152== by 0x104C4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1490152== by 0x1045DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1490152== by 0xF154D38: PetscInitialize (pinit.c:924) ==1490152== by 0xCE58153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1490152== by 0xCE581A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1490152== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1490152== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1490152== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1490152== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1490152== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1490152== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==1490152== ==1490152== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1490152== at 0xD258A1C: __open_nocancel (open64_nocancel.c:39) ==1490152== by 0xD1DCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1490152== by 0xCE8C822: ??? ==1490152== by 0xCE8C96F: ??? ==1490152== by 0x1408F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1490152== by 0x1408F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1490152== by 0x14045922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1490152== by 0x13FEA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1490152== by 0x104C4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1490152== by 0x1045DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1490152== by 0xF154D38: PetscInitialize (pinit.c:924) ==1490152== by 0xCE58153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1490152== by 0xCE581A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1490152== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1490152== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1490152== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1490152== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1490152== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1490152== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==1490152== ==1490152== Open file descriptor 115: ==1490152== ==1490152== ==1490152== Open file descriptor 112: ==1490152== ==1490152== ==1490152== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==1490152== ==1490152== ==1490152== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1490152== ==1490152== ==1490152== ==1490152== HEAP SUMMARY: ==1490152== in use at exit: 995,553 bytes in 13,913 blocks ==1490152== total heap usage: 70,542 allocs, 56,629 frees, 1,572,342,242 bytes allocated ==1490152== ==1490152== LEAK SUMMARY: ==1490152== definitely lost: 0 bytes in 0 blocks ==1490152== indirectly lost: 0 bytes in 0 blocks ==1490152== possibly lost: 0 bytes in 0 blocks ==1490152== still reachable: 24 bytes in 2 blocks ==1490152== suppressed: 995,529 bytes in 13,911 blocks ==1490152== Reachable blocks (those to which a pointer was found) are not shown. ==1490152== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1490152== ==1490152== For lists of detected and suppressed errors, rerun with: -s ==1490152== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 40)