==2877744== Memcheck, a memory error detector ==2877744== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2877744== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2877744== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==2877744== Parent PID: 2876088 ==2877744== ==2877744== ==2877744== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2877744== Open file descriptor 12: ==2877744== at 0xEC4507D: pipe (pipe.c:29) ==2877744== by 0x18A1C07D: ??? ==2877744== by 0x1402D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2877744== by 0x10813418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2877744== by 0x107ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2877744== by 0xF4A1D38: PetscInitialize (pinit.c:924) ==2877744== by 0xE4FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2877744== by 0xE4FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2877744== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2877744== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2877744== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2877744== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2877744== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2877744== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) ==2877744== ==2877744== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2877744== at 0xEC49A1C: __open_nocancel (open64_nocancel.c:39) ==2877744== by 0xEBCDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2877744== by 0xE534822: ??? ==2877744== by 0xE53496F: ??? ==2877744== by 0x140D26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2877744== by 0x140D2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2877744== by 0x14088922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2877744== by 0x1402D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2877744== by 0x10813418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2877744== by 0x107ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2877744== by 0xF4A1D38: PetscInitialize (pinit.c:924) ==2877744== by 0xE4FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2877744== by 0xE4FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2877744== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2877744== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2877744== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2877744== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2877744== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2877744== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) ==2877744== ==2877744== Open file descriptor 115: ==2877744== ==2877744== ==2877744== Open file descriptor 112: ==2877744== ==2877744== ==2877744== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt ==2877744== ==2877744== ==2877744== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2877744== ==2877744== ==2877744== ==2877744== HEAP SUMMARY: ==2877744== in use at exit: 835,564 bytes in 11,673 blocks ==2877744== total heap usage: 20,200,499 allocs, 20,188,826 frees, 2,764,681,319 bytes allocated ==2877744== ==2877744== LEAK SUMMARY: ==2877744== definitely lost: 0 bytes in 0 blocks ==2877744== indirectly lost: 0 bytes in 0 blocks ==2877744== possibly lost: 0 bytes in 0 blocks ==2877744== still reachable: 56 bytes in 3 blocks ==2877744== suppressed: 835,508 bytes in 11,670 blocks ==2877744== Reachable blocks (those to which a pointer was found) are not shown. ==2877744== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2877744== ==2877744== For lists of detected and suppressed errors, rerun with: -s ==2877744== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)