==2933558== Memcheck, a memory error detector ==2933558== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2933558== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2933558== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==2933558== Parent PID: 2932072 ==2933558== ==2933558== ==2933558== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2933558== Open file descriptor 12: ==2933558== at 0xD25C07D: pipe (pipe.c:29) ==2933558== by 0x18A1B07D: ??? ==2933558== by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2933558== by 0x104CC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2933558== by 0x10465D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2933558== by 0xF15CD38: PetscInitialize (pinit.c:924) ==2933558== by 0xCE58153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2933558== by 0xCE581A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2933558== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2933558== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2933558== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2933558== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2933558== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2933558== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==2933558== ==2933558== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2933558== at 0xD260A1C: __open_nocancel (open64_nocancel.c:39) ==2933558== by 0xD1E4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2933558== by 0xCE92822: ??? ==2933558== by 0xCE9296F: ??? ==2933558== by 0x1408F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2933558== by 0x1408F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2933558== by 0x14045922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2933558== by 0x13FEA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2933558== by 0x104CC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2933558== by 0x10465D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2933558== by 0xF15CD38: PetscInitialize (pinit.c:924) ==2933558== by 0xCE58153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2933558== by 0xCE581A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2933558== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2933558== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2933558== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2933558== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2933558== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2933558== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==2933558== ==2933558== Open file descriptor 115: ==2933558== ==2933558== ==2933558== Open file descriptor 112: ==2933558== ==2933558== ==2933558== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==2933558== ==2933558== ==2933558== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2933558== ==2933558== ==2933558== ==2933558== HEAP SUMMARY: ==2933558== in use at exit: 835,601 bytes in 11,676 blocks ==2933558== total heap usage: 66,279 allocs, 54,603 frees, 1,541,008,221 bytes allocated ==2933558== ==2933558== LEAK SUMMARY: ==2933558== definitely lost: 0 bytes in 0 blocks ==2933558== indirectly lost: 0 bytes in 0 blocks ==2933558== possibly lost: 0 bytes in 0 blocks ==2933558== still reachable: 24 bytes in 2 blocks ==2933558== suppressed: 835,577 bytes in 11,674 blocks ==2933558== Reachable blocks (those to which a pointer was found) are not shown. ==2933558== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2933558== ==2933558== For lists of detected and suppressed errors, rerun with: -s ==2933558== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 38 from 38)