==1546563== Memcheck, a memory error detector ==1546563== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1546563== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1546563== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==1546563== Parent PID: 1544859 ==1546563== ==1546563== ==1546563== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1546563== Open file descriptor 12: ==1546563== at 0xEC3D07D: pipe (pipe.c:29) ==1546563== by 0x18A1D07D: ??? ==1546563== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1546563== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1546563== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1546563== by 0xF499D38: PetscInitialize (pinit.c:924) ==1546563== by 0xE4FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1546563== by 0xE4FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1546563== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1546563== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1546563== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1546563== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1546563== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1546563== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) ==1546563== ==1546563== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1546563== at 0xEC41A1C: __open_nocancel (open64_nocancel.c:39) ==1546563== by 0xEBC5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1546563== by 0xE52E822: ??? ==1546563== by 0xE52E96F: ??? ==1546563== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1546563== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1546563== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1546563== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1546563== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1546563== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1546563== by 0xF499D38: PetscInitialize (pinit.c:924) ==1546563== by 0xE4FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1546563== by 0xE4FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1546563== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1546563== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1546563== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1546563== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1546563== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1546563== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) ==1546563== ==1546563== Open file descriptor 115: ==1546563== ==1546563== ==1546563== Open file descriptor 112: ==1546563== ==1546563== ==1546563== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt ==1546563== ==1546563== ==1546563== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1546563== ==1546563== ==1546563== ==1546563== HEAP SUMMARY: ==1546563== in use at exit: 995,526 bytes in 13,910 blocks ==1546563== total heap usage: 20,204,756 allocs, 20,190,846 frees, 2,796,014,989 bytes allocated ==1546563== ==1546563== LEAK SUMMARY: ==1546563== definitely lost: 0 bytes in 0 blocks ==1546563== indirectly lost: 0 bytes in 0 blocks ==1546563== possibly lost: 0 bytes in 0 blocks ==1546563== still reachable: 56 bytes in 3 blocks ==1546563== suppressed: 995,470 bytes in 13,907 blocks ==1546563== Reachable blocks (those to which a pointer was found) are not shown. ==1546563== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1546563== ==1546563== For lists of detected and suppressed errors, rerun with: -s ==1546563== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)