==2279270== Memcheck, a memory error detector ==2279270== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2279270== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2279270== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==2279270== Parent PID: 2277183 ==2279270== ==2279270== ==2279270== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2279270== Open file descriptor 12: ==2279270== at 0xF59426D: pipe (pipe.c:29) ==2279270== by 0x1976E07D: ??? ==2279270== by 0x14D0D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2279270== by 0x11233418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2279270== by 0x111CCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2279270== by 0xFEC3D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2279270== by 0xF0F52DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2279270== by 0xF0F532D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2279270== by 0x1337B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2279270== by 0x12E7D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2279270== by 0x130F28: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2279270== by 0x130E23: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2279270== by 0x131437: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2279270== by 0x12CFD5: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==2279270== ==2279270== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2279270== at 0xF598C0C: __open_nocancel (open64_nocancel.c:39) ==2279270== by 0xF51CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2279270== by 0xF12A822: ??? ==2279270== by 0xF12A96F: ??? ==2279270== by 0x14DB26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2279270== by 0x14DB2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2279270== by 0x14D68922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2279270== by 0x14D0D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2279270== by 0x11233418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2279270== by 0x111CCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2279270== by 0xFEC3D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2279270== by 0xF0F52DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2279270== by 0xF0F532D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2279270== by 0x1337B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2279270== by 0x12E7D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2279270== by 0x130F28: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2279270== by 0x130E23: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2279270== by 0x131437: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2279270== by 0x12CFD5: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==2279270== ==2279270== Open file descriptor 115: ==2279270== ==2279270== ==2279270== Open file descriptor 112: ==2279270== ==2279270== ==2279270== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==2279270== ==2279270== ==2279270== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2279270== ==2279270== ==2279270== ==2279270== HEAP SUMMARY: ==2279270== in use at exit: 857,961 bytes in 12,109 blocks ==2279270== total heap usage: 6,674,874 allocs, 6,662,765 frees, 9,199,475,637 bytes allocated ==2279270== ==2279270== LEAK SUMMARY: ==2279270== definitely lost: 0 bytes in 0 blocks ==2279270== indirectly lost: 0 bytes in 0 blocks ==2279270== possibly lost: 0 bytes in 0 blocks ==2279270== still reachable: 56 bytes in 3 blocks ==2279270== suppressed: 857,905 bytes in 12,106 blocks ==2279270== Reachable blocks (those to which a pointer was found) are not shown. ==2279270== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2279270== ==2279270== For lists of detected and suppressed errors, rerun with: -s ==2279270== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)