==2279277== Memcheck, a memory error detector ==2279277== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2279277== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2279277== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==2279277== Parent PID: 2277183 ==2279277== ==2279277== ==2279277== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2279277== Open file descriptor 12: ==2279277== at 0xF97426D: pipe (pipe.c:29) ==2279277== by 0x1976D07D: ??? ==2279277== by 0x14D174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2279277== by 0x11233418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2279277== by 0x111CCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2279277== by 0xFEC1D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2279277== by 0xF4912DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2279277== by 0xF49132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2279277== by 0x226492: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2279277== by 0x21FB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2279277== by 0x223638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2279277== by 0x2234D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2279277== by 0x223B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2279277== by 0x21DF15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==2279277== ==2279277== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2279277== at 0xF978C0C: __open_nocancel (open64_nocancel.c:39) ==2279277== by 0xF8FCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2279277== by 0xF4C6822: ??? ==2279277== by 0xF4C696F: ??? ==2279277== by 0x14DBC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2279277== by 0x14DBC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2279277== by 0x14D72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2279277== by 0x14D172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2279277== by 0x11233418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2279277== by 0x111CCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2279277== by 0xFEC1D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2279277== by 0xF4912DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2279277== by 0xF49132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2279277== by 0x226492: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2279277== by 0x21FB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2279277== by 0x223638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2279277== by 0x2234D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2279277== by 0x223B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2279277== by 0x21DF15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==2279277== ==2279277== Open file descriptor 115: ==2279277== ==2279277== ==2279277== Open file descriptor 112: ==2279277== ==2279277== ==2279277== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==2279277== ==2279277== ==2279277== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2279277== ==2279277== ==2279277== ==2279277== HEAP SUMMARY: ==2279277== in use at exit: 857,961 bytes in 12,109 blocks ==2279277== total heap usage: 5,964,476 allocs, 5,952,367 frees, 2,781,053,069 bytes allocated ==2279277== ==2279277== LEAK SUMMARY: ==2279277== definitely lost: 0 bytes in 0 blocks ==2279277== indirectly lost: 0 bytes in 0 blocks ==2279277== possibly lost: 0 bytes in 0 blocks ==2279277== still reachable: 56 bytes in 3 blocks ==2279277== suppressed: 857,905 bytes in 12,106 blocks ==2279277== Reachable blocks (those to which a pointer was found) are not shown. ==2279277== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2279277== ==2279277== For lists of detected and suppressed errors, rerun with: -s ==2279277== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)