==2286038== Memcheck, a memory error detector ==2286038== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2286038== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2286038== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==2286038== Parent PID: 2277183 ==2286038== ==2286038== ==2286038== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2286038== Open file descriptor 12: ==2286038== at 0xF84926D: pipe (pipe.c:29) ==2286038== by 0x1976D07D: ??? ==2286038== by 0x14D174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2286038== by 0x1114A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2286038== by 0x110E3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2286038== by 0xFDDAD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2286038== by 0xF4912DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2286038== by 0xF49132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2286038== by 0x11C9B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2286038== by 0x1182D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2286038== by 0x11A55A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2286038== by 0x11A455: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2286038== by 0x11AA69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2286038== by 0x116AD5: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==2286038== ==2286038== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2286038== at 0xF84DC0C: __open_nocancel (open64_nocancel.c:39) ==2286038== by 0xF7D1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2286038== by 0xF4C6822: ??? ==2286038== by 0xF4C696F: ??? ==2286038== by 0x14DBC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2286038== by 0x14DBC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2286038== by 0x14D72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2286038== by 0x14D172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2286038== by 0x1114A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2286038== by 0x110E3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2286038== by 0xFDDAD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2286038== by 0xF4912DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2286038== by 0xF49132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2286038== by 0x11C9B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2286038== by 0x1182D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2286038== by 0x11A55A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2286038== by 0x11A455: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2286038== by 0x11AA69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2286038== by 0x116AD5: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==2286038== ==2286038== Open file descriptor 115: ==2286038== ==2286038== ==2286038== Open file descriptor 112: ==2286038== ==2286038== ==2286038== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==2286038== ==2286038== ==2286038== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2286038== ==2286038== ==2286038== ==2286038== HEAP SUMMARY: ==2286038== in use at exit: 857,961 bytes in 12,109 blocks ==2286038== total heap usage: 1,818,416 allocs, 1,806,307 frees, 1,867,377,573 bytes allocated ==2286038== ==2286038== LEAK SUMMARY: ==2286038== definitely lost: 0 bytes in 0 blocks ==2286038== indirectly lost: 0 bytes in 0 blocks ==2286038== possibly lost: 0 bytes in 0 blocks ==2286038== still reachable: 56 bytes in 3 blocks ==2286038== suppressed: 857,905 bytes in 12,106 blocks ==2286038== Reachable blocks (those to which a pointer was found) are not shown. ==2286038== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2286038== ==2286038== For lists of detected and suppressed errors, rerun with: -s ==2286038== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)