==2990318== Memcheck, a memory error detector ==2990318== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2990318== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2990318== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==2990318== Parent PID: 2990079 ==2990318== ==2990318== ==2990318== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2990318== Open file descriptor 12: ==2990318== at 0x646507D: pipe (pipe.c:29) ==2990318== by 0xAF1807D: ??? ==2990318== by 0x8F474CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2990318== by 0x6660418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2990318== by 0x65F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2990318== by 0x4A96D38: PetscInitialize (pinit.c:924) ==2990318== by 0x496D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2990318== by 0x496D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2990318== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2990318== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2990318== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2990318== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2990318== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2990318== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==2990318== ==2990318== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2990318== at 0x6469A1C: __open_nocancel (open64_nocancel.c:39) ==2990318== by 0x63EDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2990318== by 0x5D26822: ??? ==2990318== by 0x5D2696F: ??? ==2990318== by 0x8FEC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2990318== by 0x8FEC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2990318== by 0x8FA2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2990318== by 0x8F472DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2990318== by 0x6660418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2990318== by 0x65F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2990318== by 0x4A96D38: PetscInitialize (pinit.c:924) ==2990318== by 0x496D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2990318== by 0x496D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2990318== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2990318== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2990318== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2990318== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2990318== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2990318== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==2990318== ==2990318== Open file descriptor 115: ==2990318== ==2990318== ==2990318== Open file descriptor 112: ==2990318== ==2990318== ==2990318== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==2990318== ==2990318== ==2990318== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2990318== ==2990318== ==2990318== ==2990318== HEAP SUMMARY: ==2990318== in use at exit: 835,633 bytes in 11,686 blocks ==2990318== total heap usage: 66,924 allocs, 55,238 frees, 1,550,517,078 bytes allocated ==2990318== ==2990318== LEAK SUMMARY: ==2990318== definitely lost: 0 bytes in 0 blocks ==2990318== indirectly lost: 0 bytes in 0 blocks ==2990318== possibly lost: 0 bytes in 0 blocks ==2990318== still reachable: 24 bytes in 2 blocks ==2990318== suppressed: 835,609 bytes in 11,684 blocks ==2990318== Reachable blocks (those to which a pointer was found) are not shown. ==2990318== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2990318== ==2990318== For lists of detected and suppressed errors, rerun with: -s ==2990318== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 42 from 36)