==3005777== Memcheck, a memory error detector ==3005777== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3005777== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3005777== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==3005777== Parent PID: 2990079 ==3005777== ==3005777== ==3005777== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3005777== Open file descriptor 12: ==3005777== at 0x10DA007D: pipe (pipe.c:29) ==3005777== by 0x196AB07D: ??? ==3005777== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3005777== by 0x105C1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3005777== by 0x1055AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3005777== by 0xF223D38: PetscInitialize (pinit.c:924) ==3005777== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3005777== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3005777== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3005777== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3005777== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3005777== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3005777== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3005777== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==3005777== ==3005777== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3005777== at 0x10DA4A1C: __open_nocancel (open64_nocancel.c:39) ==3005777== by 0x10D28BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3005777== by 0x104B3822: ??? ==3005777== by 0x104B396F: ??? ==3005777== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3005777== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3005777== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3005777== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3005777== by 0x105C1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3005777== by 0x1055AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3005777== by 0xF223D38: PetscInitialize (pinit.c:924) ==3005777== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3005777== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3005777== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3005777== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3005777== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3005777== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3005777== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3005777== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==3005777== ==3005777== Open file descriptor 115: ==3005777== ==3005777== ==3005777== Open file descriptor 112: ==3005777== ==3005777== ==3005777== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==3005777== ==3005777== ==3005777== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3005777== ==3005777== ==3005777== ==3005777== HEAP SUMMARY: ==3005777== in use at exit: 835,564 bytes in 11,673 blocks ==3005777== total heap usage: 1,407,766 allocs, 1,396,093 frees, 1,600,285,639 bytes allocated ==3005777== ==3005777== LEAK SUMMARY: ==3005777== definitely lost: 0 bytes in 0 blocks ==3005777== indirectly lost: 0 bytes in 0 blocks ==3005777== possibly lost: 0 bytes in 0 blocks ==3005777== still reachable: 56 bytes in 3 blocks ==3005777== suppressed: 835,508 bytes in 11,670 blocks ==3005777== Reachable blocks (those to which a pointer was found) are not shown. ==3005777== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3005777== ==3005777== For lists of detected and suppressed errors, rerun with: -s ==3005777== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)