==1581383== Memcheck, a memory error detector ==1581383== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1581383== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1581383== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==1581383== Parent PID: 1581157 ==1581383== ==1581383== ==1581383== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1581383== Open file descriptor 12: ==1581383== at 0x645D07D: pipe (pipe.c:29) ==1581383== by 0xAF1A07D: ??? ==1581383== by 0x8F3F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1581383== by 0x6658418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1581383== by 0x65F1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1581383== by 0x4A96D38: PetscInitialize (pinit.c:924) ==1581383== by 0x496D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1581383== by 0x496D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1581383== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1581383== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1581383== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1581383== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1581383== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1581383== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==1581383== ==1581383== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1581383== at 0x6461A1C: __open_nocancel (open64_nocancel.c:39) ==1581383== by 0x63E5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1581383== by 0x5D20822: ??? ==1581383== by 0x5D2096F: ??? ==1581383== by 0x8FE46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1581383== by 0x8FE4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1581383== by 0x8F9A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1581383== by 0x8F3F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1581383== by 0x6658418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1581383== by 0x65F1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1581383== by 0x4A96D38: PetscInitialize (pinit.c:924) ==1581383== by 0x496D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1581383== by 0x496D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1581383== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1581383== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1581383== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1581383== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1581383== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1581383== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==1581383== ==1581383== Open file descriptor 115: ==1581383== ==1581383== ==1581383== Open file descriptor 112: ==1581383== ==1581383== ==1581383== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==1581383== ==1581383== ==1581383== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1581383== ==1581383== ==1581383== ==1581383== HEAP SUMMARY: ==1581383== in use at exit: 995,569 bytes in 13,923 blocks ==1581383== total heap usage: 71,183 allocs, 57,260 frees, 1,581,850,982 bytes allocated ==1581383== ==1581383== LEAK SUMMARY: ==1581383== definitely lost: 0 bytes in 0 blocks ==1581383== indirectly lost: 0 bytes in 0 blocks ==1581383== possibly lost: 0 bytes in 0 blocks ==1581383== still reachable: 24 bytes in 2 blocks ==1581383== suppressed: 995,545 bytes in 13,921 blocks ==1581383== Reachable blocks (those to which a pointer was found) are not shown. ==1581383== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1581383== ==1581383== For lists of detected and suppressed errors, rerun with: -s ==1581383== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35)