==1596932== Memcheck, a memory error detector ==1596932== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1596932== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1596932== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1596932== Parent PID: 1581157 ==1596932== ==1596932== ==1596932== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1596932== Open file descriptor 12: ==1596932== at 0xFB9707D: pipe (pipe.c:29) ==1596932== by 0x196AD07D: ??? ==1596932== by 0x14CB44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1596932== by 0x1149B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1596932== by 0x11434D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1596932== by 0x10129D38: PetscInitialize (pinit.c:924) ==1596932== by 0xF4972DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1596932== by 0xF49732D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1596932== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1596932== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1596932== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1596932== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1596932== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1596932== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1596932== ==1596932== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1596932== at 0xFB9BA1C: __open_nocancel (open64_nocancel.c:39) ==1596932== by 0xFB1FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1596932== by 0xF4CC822: ??? ==1596932== by 0xF4CC96F: ??? ==1596932== by 0x14D596DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1596932== by 0x14D59938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1596932== by 0x14D0F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1596932== by 0x14CB42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1596932== by 0x1149B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1596932== by 0x11434D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1596932== by 0x10129D38: PetscInitialize (pinit.c:924) ==1596932== by 0xF4972DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1596932== by 0xF49732D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1596932== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1596932== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1596932== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1596932== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1596932== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1596932== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1596932== ==1596932== Open file descriptor 115: ==1596932== ==1596932== ==1596932== Open file descriptor 112: ==1596932== ==1596932== ==1596932== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==1596932== ==1596932== ==1596932== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1596932== ==1596932== ==1596932== ==1596932== HEAP SUMMARY: ==1596932== in use at exit: 995,526 bytes in 13,910 blocks ==1596932== total heap usage: 2,098,658 allocs, 2,084,748 frees, 1,908,253,369 bytes allocated ==1596932== ==1596932== LEAK SUMMARY: ==1596932== definitely lost: 0 bytes in 0 blocks ==1596932== indirectly lost: 0 bytes in 0 blocks ==1596932== possibly lost: 0 bytes in 0 blocks ==1596932== still reachable: 56 bytes in 3 blocks ==1596932== suppressed: 995,470 bytes in 13,907 blocks ==1596932== Reachable blocks (those to which a pointer was found) are not shown. ==1596932== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1596932== ==1596932== For lists of detected and suppressed errors, rerun with: -s ==1596932== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)