==2359338== Memcheck, a memory error detector ==2359338== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2359338== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2359338== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMeshBasedCellPopulationWithGhostNodes -malloc_debug -malloc_dump -memory_info ==2359338== Parent PID: 2357573 ==2359338== ==2359338== ==2359338== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2359338== Open file descriptor 12: ==2359338== at 0x10A4B26D: pipe (pipe.c:29) ==2359338== by 0x1976C07D: ??? ==2359338== by 0x14CC04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2359338== by 0x105B1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2359338== by 0x1054AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2359338== by 0xF21ED38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2359338== by 0xF0F52DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2359338== by 0xF0F532D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2359338== by 0x159C05: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2359338== by 0x15216D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2359338== by 0x1555B6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2359338== by 0x155456: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2359338== by 0x155AED: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2359338== by 0x150595: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) ==2359338== ==2359338== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2359338== at 0x10A4FC0C: __open_nocancel (open64_nocancel.c:39) ==2359338== by 0x109D3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2359338== by 0x104A8822: ??? ==2359338== by 0x104A896F: ??? ==2359338== by 0x14D656DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2359338== by 0x14D65938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2359338== by 0x14D1B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2359338== by 0x14CC02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2359338== by 0x105B1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2359338== by 0x1054AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2359338== by 0xF21ED38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2359338== by 0xF0F52DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2359338== by 0xF0F532D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2359338== by 0x159C05: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2359338== by 0x15216D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2359338== by 0x1555B6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2359338== by 0x155456: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2359338== by 0x155AED: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2359338== by 0x150595: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) ==2359338== ==2359338== Open file descriptor 115: ==2359338== ==2359338== ==2359338== Open file descriptor 112: ==2359338== ==2359338== ==2359338== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt ==2359338== ==2359338== ==2359338== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2359338== ==2359338== ==2359338== ==2359338== HEAP SUMMARY: ==2359338== in use at exit: 858,024 bytes in 12,113 blocks ==2359338== total heap usage: 228,438 allocs, 216,325 frees, 1,568,001,341 bytes allocated ==2359338== ==2359338== LEAK SUMMARY: ==2359338== definitely lost: 0 bytes in 0 blocks ==2359338== indirectly lost: 0 bytes in 0 blocks ==2359338== possibly lost: 0 bytes in 0 blocks ==2359338== still reachable: 56 bytes in 3 blocks ==2359338== suppressed: 857,968 bytes in 12,110 blocks ==2359338== Reachable blocks (those to which a pointer was found) are not shown. ==2359338== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2359338== ==2359338== For lists of detected and suppressed errors, rerun with: -s ==2359338== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)