==2366534== Memcheck, a memory error detector ==2366534== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2366534== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2366534== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==2366534== Parent PID: 2357573 ==2366534== ==2366534== ==2366534== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2366534== Open file descriptor 12: ==2366534== at 0x10A4B26D: pipe (pipe.c:29) ==2366534== by 0x1976C07D: ??? ==2366534== by 0x14CC04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2366534== by 0x105B1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2366534== by 0x1054AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2366534== by 0xF21ED38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2366534== by 0xF0F52DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2366534== by 0xF0F532D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2366534== by 0x129805: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2366534== by 0x1249ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2366534== by 0x127006: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2366534== by 0x126EA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2366534== by 0x12753D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2366534== by 0x122E15: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==2366534== ==2366534== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2366534== at 0x10A4FC0C: __open_nocancel (open64_nocancel.c:39) ==2366534== by 0x109D3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2366534== by 0x104A8822: ??? ==2366534== by 0x104A896F: ??? ==2366534== by 0x14D656DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2366534== by 0x14D65938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2366534== by 0x14D1B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2366534== by 0x14CC02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2366534== by 0x105B1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2366534== by 0x1054AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2366534== by 0xF21ED38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2366534== by 0xF0F52DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2366534== by 0xF0F532D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2366534== by 0x129805: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2366534== by 0x1249ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2366534== by 0x127006: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2366534== by 0x126EA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2366534== by 0x12753D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2366534== by 0x122E15: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==2366534== ==2366534== Open file descriptor 115: ==2366534== ==2366534== ==2366534== Open file descriptor 112: ==2366534== ==2366534== ==2366534== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==2366534== ==2366534== ==2366534== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2366534== ==2366534== ==2366534== ==2366534== HEAP SUMMARY: ==2366534== in use at exit: 857,961 bytes in 12,109 blocks ==2366534== total heap usage: 1,396,809 allocs, 1,384,700 frees, 1,602,390,454 bytes allocated ==2366534== ==2366534== LEAK SUMMARY: ==2366534== definitely lost: 0 bytes in 0 blocks ==2366534== indirectly lost: 0 bytes in 0 blocks ==2366534== possibly lost: 0 bytes in 0 blocks ==2366534== still reachable: 56 bytes in 3 blocks ==2366534== suppressed: 857,905 bytes in 12,106 blocks ==2366534== Reachable blocks (those to which a pointer was found) are not shown. ==2366534== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2366534== ==2366534== For lists of detected and suppressed errors, rerun with: -s ==2366534== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)