==2399287== Memcheck, a memory error detector ==2399287== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2399287== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2399287== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==2399287== Parent PID: 2397760 ==2399287== ==2399287== ==2399287== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2399287== Open file descriptor 12: ==2399287== at 0xDB4B26D: pipe (pipe.c:29) ==2399287== by 0x1976D07D: ??? ==2399287== by 0x14D0C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2399287== by 0x1114A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2399287== by 0x110E3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2399287== by 0xFDDAD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2399287== by 0xD7512DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2399287== by 0xD75132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2399287== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2399287== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2399287== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2399287== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2399287== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2399287== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==2399287== ==2399287== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2399287== at 0xDB4FC0C: __open_nocancel (open64_nocancel.c:39) ==2399287== by 0xDAD3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2399287== by 0xD786822: ??? ==2399287== by 0xD78696F: ??? ==2399287== by 0x14DB16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2399287== by 0x14DB1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2399287== by 0x14D67922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2399287== by 0x14D0C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2399287== by 0x1114A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2399287== by 0x110E3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2399287== by 0xFDDAD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2399287== by 0xD7512DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2399287== by 0xD75132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2399287== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2399287== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2399287== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2399287== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2399287== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2399287== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==2399287== ==2399287== Open file descriptor 115: ==2399287== ==2399287== ==2399287== Open file descriptor 112: ==2399287== ==2399287== ==2399287== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==2399287== ==2399287== ==2399287== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2399287== ==2399287== ==2399287== ==2399287== HEAP SUMMARY: ==2399287== in use at exit: 857,992 bytes in 12,112 blocks ==2399287== total heap usage: 67,061 allocs, 54,949 frees, 1,543,779,905 bytes allocated ==2399287== ==2399287== LEAK SUMMARY: ==2399287== definitely lost: 0 bytes in 0 blocks ==2399287== indirectly lost: 0 bytes in 0 blocks ==2399287== possibly lost: 0 bytes in 0 blocks ==2399287== still reachable: 24 bytes in 2 blocks ==2399287== suppressed: 857,968 bytes in 12,110 blocks ==2399287== Reachable blocks (those to which a pointer was found) are not shown. ==2399287== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2399287== ==2399287== For lists of detected and suppressed errors, rerun with: -s ==2399287== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)