==1706631== Memcheck, a memory error detector ==1706631== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1706631== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1706631== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==1706631== Parent PID: 1690613 ==1706631== ==1706631== ==1706631== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1706631== Open file descriptor 12: ==1706631== at 0x111E507D: pipe (pipe.c:29) ==1706631== by 0x1B37007D: ??? ==1706631== by 0x165744CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1706631== by 0x12E42418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1706631== by 0x12DDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1706631== by 0x11AD2D38: PetscInitialize (pinit.c:924) ==1706631== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1706631== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1706631== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1706631== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1706631== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1706631== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1706631== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1706631== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==1706631== ==1706631== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1706631== at 0x111E9A1C: __open_nocancel (open64_nocancel.c:39) ==1706631== by 0x1116DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1706631== by 0x109EF822: ??? ==1706631== by 0x109EF96F: ??? ==1706631== by 0x166196DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1706631== by 0x16619938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1706631== by 0x165CF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1706631== by 0x165742DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1706631== by 0x12E42418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1706631== by 0x12DDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1706631== by 0x11AD2D38: PetscInitialize (pinit.c:924) ==1706631== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1706631== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1706631== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1706631== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1706631== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1706631== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1706631== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1706631== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==1706631== ==1706631== Open file descriptor 115: ==1706631== ==1706631== ==1706631== Open file descriptor 112: ==1706631== ==1706631== ==1706631== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==1706631== ==1706631== ==1706631== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1706631== ==1706631== ==1706631== ==1706631== HEAP SUMMARY: ==1706631== in use at exit: 995,542 bytes in 13,910 blocks ==1706631== total heap usage: 6,324,071 allocs, 6,310,161 frees, 2,290,845,019 bytes allocated ==1706631== ==1706631== LEAK SUMMARY: ==1706631== definitely lost: 0 bytes in 0 blocks ==1706631== indirectly lost: 0 bytes in 0 blocks ==1706631== possibly lost: 0 bytes in 0 blocks ==1706631== still reachable: 56 bytes in 3 blocks ==1706631== suppressed: 995,486 bytes in 13,907 blocks ==1706631== Reachable blocks (those to which a pointer was found) are not shown. ==1706631== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1706631== ==1706631== For lists of detected and suppressed errors, rerun with: -s ==1706631== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)