==1692975== Memcheck, a memory error detector ==1692975== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1692975== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1692975== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==1692975== Parent PID: 1690613 ==1692975== ==1692975== ==1692975== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1692975== Open file descriptor 12: ==1692975== at 0xF8E107D: pipe (pipe.c:29) ==1692975== by 0x196AE07D: ??? ==1692975== by 0x14CB54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1692975== by 0x11582418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1692975== by 0x1151BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1692975== by 0x10212D38: PetscInitialize (pinit.c:924) ==1692975== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1692975== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1692975== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1692975== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1692975== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1692975== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1692975== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1692975== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==1692975== ==1692975== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1692975== at 0xF8E5A1C: __open_nocancel (open64_nocancel.c:39) ==1692975== by 0xF869BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1692975== by 0xF12F822: ??? ==1692975== by 0xF12F96F: ??? ==1692975== by 0x14D5A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1692975== by 0x14D5A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1692975== by 0x14D10922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1692975== by 0x14CB52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1692975== by 0x11582418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1692975== by 0x1151BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1692975== by 0x10212D38: PetscInitialize (pinit.c:924) ==1692975== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1692975== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1692975== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1692975== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1692975== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1692975== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1692975== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1692975== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==1692975== ==1692975== Open file descriptor 115: ==1692975== ==1692975== ==1692975== Open file descriptor 112: ==1692975== ==1692975== ==1692975== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==1692975== ==1692975== ==1692975== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1692975== ==1692975== ==1692975== ==1692975== HEAP SUMMARY: ==1692975== in use at exit: 995,526 bytes in 13,910 blocks ==1692975== total heap usage: 6,687,087 allocs, 6,673,177 frees, 9,228,764,057 bytes allocated ==1692975== ==1692975== LEAK SUMMARY: ==1692975== definitely lost: 0 bytes in 0 blocks ==1692975== indirectly lost: 0 bytes in 0 blocks ==1692975== possibly lost: 0 bytes in 0 blocks ==1692975== still reachable: 56 bytes in 3 blocks ==1692975== suppressed: 995,470 bytes in 13,907 blocks ==1692975== Reachable blocks (those to which a pointer was found) are not shown. ==1692975== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1692975== ==1692975== For lists of detected and suppressed errors, rerun with: -s ==1692975== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)