==1706367== Memcheck, a memory error detector ==1706367== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1706367== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1706367== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1706367== Parent PID: 1690613 ==1706367== ==1706367== ==1706367== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1706367== Open file descriptor 12: ==1706367== at 0x10D9807D: pipe (pipe.c:29) ==1706367== by 0x196AE07D: ??? ==1706367== by 0x14C154CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1706367== by 0x105B9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1706367== by 0x10552D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1706367== by 0xF223D38: PetscInitialize (pinit.c:924) ==1706367== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1706367== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1706367== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1706367== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1706367== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1706367== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1706367== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1706367== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==1706367== ==1706367== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1706367== at 0x10D9CA1C: __open_nocancel (open64_nocancel.c:39) ==1706367== by 0x10D20BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1706367== by 0x104AD822: ??? ==1706367== by 0x104AD96F: ??? ==1706367== by 0x14CBA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1706367== by 0x14CBA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1706367== by 0x14C70922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1706367== by 0x14C152DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1706367== by 0x105B9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1706367== by 0x10552D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1706367== by 0xF223D38: PetscInitialize (pinit.c:924) ==1706367== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1706367== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1706367== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1706367== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1706367== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1706367== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1706367== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1706367== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==1706367== ==1706367== Open file descriptor 115: ==1706367== ==1706367== ==1706367== Open file descriptor 112: ==1706367== ==1706367== ==1706367== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==1706367== ==1706367== ==1706367== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1706367== ==1706367== ==1706367== ==1706367== HEAP SUMMARY: ==1706367== in use at exit: 995,526 bytes in 13,910 blocks ==1706367== total heap usage: 1,412,026 allocs, 1,398,116 frees, 1,631,619,679 bytes allocated ==1706367== ==1706367== LEAK SUMMARY: ==1706367== definitely lost: 0 bytes in 0 blocks ==1706367== indirectly lost: 0 bytes in 0 blocks ==1706367== possibly lost: 0 bytes in 0 blocks ==1706367== still reachable: 56 bytes in 3 blocks ==1706367== suppressed: 995,470 bytes in 13,907 blocks ==1706367== Reachable blocks (those to which a pointer was found) are not shown. ==1706367== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1706367== ==1706367== For lists of detected and suppressed errors, rerun with: -s ==1706367== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)